Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11780	PS417_11785	PS417_11790	PS417_11795	PS417_11800
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	-0.8	-0.0	-0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	-0.6	-0.1	-0.3	+0.0
carbon source	Carbon source D-Mannitol 2.5 mM	+0.1	-0.2	-0.6	-0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.2	+0.2	-1.0	-0.3
carbon source	acetate (C)	-0.0	-0.2	+0.2	-0.7	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.1	-0.1	-1.7	+0.6
phage	JP1 MOI 10	+0.2	-0.7	-0.7	+0.3	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	+0.3	+0.1	-0.6	-0.0
phage	Wcs_1	+0.2	-0.8	-0.0	+0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.5	-0.1	-0.5	+0.1
soil	soil sample 8; outgrowth in LB	+0.2	-0.8	+0.1	+0.3	-0.2
stress	Cisplatin 0.01 mg/ml	-0.2	+0.3	-0.4	+0.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.6	-0.1	-0.7	-0.3
no stress control on plate	growth on LB_noSalt plate	-0.1	+0.4	+0.5	-0.5	-0.2
soil	soil sample 5; outgrowth in LB	+0.5	+0.4	-0.7	-0.5	+0.5
seeds	Growth on radish seeds for 72 hours	-0.0	-0.3	-0.4	+0.2	+0.8
phage	JP1 MOI 1	+0.3	+0.7	-0.3	+0.0	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.8	+0.2	+0.0	-0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.4	+0.4	-0.1	+0.5
carbon source	Carbon source D-Mannitol 10 mM	+0.0	+0.7	+0.0	-0.4	+0.5
phage	JP1 MOI 1	+0.3	+0.6	-0.2	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.4	+0.4	-0.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	-0.4	+0.2	+0.7	-0.1
carbon source	L-Valine (C)	-0.3	+0.3	+0.3	+0.7	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.5	-0.2	+0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.6	-0.2	+0.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.4	-0.3	+0.7	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.4	+0.9	+0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.5	+1.0	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	+0.0	+0.1	+1.2	+0.5