Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_11775 and PS417_11780 are separated by 9 nucleotidesPS417_11780 and PS417_11785 are separated by 140 nucleotidesPS417_11785 and PS417_11790 are separated by 24 nucleotidesPS417_11790 and PS417_11795 overlap by 4 nucleotides PS417_11775: PS417_11775 - acetoin dehydrogenase, at 2,562,380 to 2,563,474 _11775 PS417_11780: PS417_11780 - AraC family transcriptional regulator, at 2,563,484 to 2,564,380 _11780 PS417_11785: PS417_11785 - glutamine synthetase, at 2,564,521 to 2,565,879 _11785 PS417_11790: PS417_11790 - ABC transporter substrate-binding protein, at 2,565,904 to 2,566,992 _11790 PS417_11795: PS417_11795 - FAD-dependent oxidoreductase, at 2,566,989 to 2,568,281 _11795
Group Condition PS417_11775 PS417_11780 PS417_11785 PS417_11790 PS417_11795
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.0 +0.1 -0.1 -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -0.7 -0.6 -0.1 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.0 +0.4 -0.4 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 +0.1 -0.1 -0.1 +0.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -0.6 +0.3 +0.1 -0.6
carbon source Carbon source D-Mannitol 2.5 mM +0.2 +0.1 -0.2 -0.6 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.8 +0.1 +0.2 -0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -0.4 +0.0 +0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.4 -0.5 +0.1 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -0.3 +0.2 -0.4 +0.2
phage JP1 MOI 10 +0.1 +0.2 -0.7 -0.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 -0.4 +0.2 +0.2 -1.0
soil soil sample 5; outgrowth in LB -0.1 +0.5 +0.4 -0.7 -0.5
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.2 -0.6 +0.5 -0.1 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.2 +0.6 -0.1 -0.7
phage moi 100 Time6-phageFRS -0.3 -0.2 +0.6 +0.3 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 +0.3 -0.2 +0.0 +0.6
carbon source L-Valine (C) +0.4 -0.7 -0.0 +0.6 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.5 +0.4 -0.4 +0.2 +0.7
carbon source L-Valine (C) -0.4 -0.3 +0.3 +0.3 +0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 -0.4 +0.4 +0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.6 +0.4 -0.3 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.6 +0.5 -0.2 +0.6
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 -0.3 +0.2 +0.3 -0.0
phage P. simiae OR Antrim MOI 1 +0.6 -0.1 -0.2 +0.2 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 +0.2 +0.5 +1.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 -0.2 +0.7 -0.0 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.4 -0.4 +0.9 +0.9
solid stress Fraxetin 3 mM; solid stress +0.4 +0.5 +0.6 -0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.6 +0.2 +0.1 +0.3 +0.7
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