Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_11770	PS417_11775	PS417_11780	PS417_11785	PS417_11790
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.4	-0.3	-0.5	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.7	-0.3	+0.2	-0.4
soil	soil sample 3; outgrowth in LB	-2.4	+0.2	+0.1	-0.1	+0.2
carbon source	L-Valine (C)	-2.0	+0.4	-0.7	-0.0	+0.6
phage	JP1 MOI 0.1	-1.0	+0.1	-0.2	+0.3	-0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.8	-0.2	-0.6	+0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	+0.5	-0.4	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.3	+0.2	-0.4	+0.2	+0.2
soil	soil sample 5; outgrowth in LB	-0.8	-0.1	+0.5	+0.4	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	-0.8	-0.4	-0.5	+0.1
phage	JP1 MOI 1	-0.9	-0.3	+0.3	+0.7	-0.3
motility	outer cut, LB soft agar motility assay	+0.6	-0.9	+0.3	-0.3	-0.1
phage	JP1 MOI 10	+1.0	+0.1	+0.2	-0.7	-0.7
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	-0.7	+0.5	-0.2	+0.4	+0.2
carbon source	2-Deoxy-D-Ribose (C)	+0.6	-0.7	-0.3	+0.4	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.0	-0.3	-0.5	-0.2	+0.2
seeds	Growth on radish seeds for 72 hours	+1.2	-0.1	-0.8	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	-0.8	+0.1	+0.3	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+1.0	-0.3	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	+0.1	+1.2	+0.0	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.3	+0.4	-0.4	+0.9
phage	Wcs_1	+1.2	+0.2	+0.2	-0.8	-0.0
phage moi 100	Time6-phageFRS	+0.6	-0.3	-0.2	+0.6	+0.3
stress	methylglyoxal 0.032 vol%	+1.6	+0.1	+0.0	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	-0.6	+0.6	+0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.0	-0.5	+0.2	+0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-0.3	+0.6	+0.5	-0.2
no stress control on plate	growth on LB_noSalt plate	+0.9	+0.2	-0.1	+0.4	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.0	-0.0	+0.8	+0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.5	-0.1	+0.6	+0.2	+0.2