Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11740	PS417_11745	PS417_11750	PS417_11755	PS417_11760
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	-0.1	-0.7	-0.8
phage	P. simiae Grant Run MOI 10	N.D.	N.D.	-0.1	-0.4	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	-0.2	-0.6	-0.6
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	N.D.	N.D.	-0.2	-0.2	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.1	+0.1	-1.5
phage	P. simiae Grant Run MOI 0.1	N.D.	N.D.	+0.1	-0.4	-1.0
phage	P. simiae OR Antrim MOI 10	N.D.	N.D.	+0.0	-0.9	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.1	-0.7	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.2	-0.8	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.1	-0.4	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	N.D.	-0.1	-0.8	-0.4
phage	P. simiae Grant Run MOI 0.1	N.D.	N.D.	-0.1	-0.7	-0.4
phage	P. simiae OR Antrim MOI 1	N.D.	N.D.	+0.1	-0.7	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.3	-0.7	-0.7
phage	P. simiae ORA MOI 1	N.D.	N.D.	+0.2	-0.4	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	N.D.	+0.1	+0.1	-1.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	N.D.	-0.4	-0.6	+0.2
phage	JP1 MOI 1	N.D.	N.D.	-0.2	+0.4	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.4	-0.3	-0.8
ecofab	LB 0.5x in EcoFAB_3.5mL	N.D.	N.D.	-0.1	+0.5	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.0	+0.5	-0.7
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	N.D.	N.D.	-0.1	+0.6	-0.6
stress	Cisplatin 0.01 mg/ml	N.D.	N.D.	-0.0	-0.6	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	N.D.	-0.1	-0.7	+0.7
phage	JP1 MOI 1	N.D.	N.D.	+0.1	+0.7	-0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	+0.2	+0.6	-0.5
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	+0.1	-0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	+1.2	-0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.1	+1.1	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	+0.1	+1.4	-0.1