Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11735	PS417_11740	PS417_11745	PS417_11750	PS417_11755
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.0	N.D.	N.D.	+0.1	-0.5
phage	JP1 MOI 10	-1.1	N.D.	N.D.	-0.2	-0.0
phage	P. simiae OR Antrim MOI 10	-0.3	N.D.	N.D.	+0.0	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	N.D.	N.D.	-0.1	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	N.D.	N.D.	-0.1	-0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	N.D.	N.D.	-0.4	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	N.D.	N.D.	-0.2	-0.8
phage	JP1 MOI 1	-0.5	N.D.	N.D.	-0.2	+0.4
liquid stress	Scopoletin 2 mM; liquid stress	+0.3	N.D.	N.D.	+0.0	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	N.D.	N.D.	+0.3	-0.7
ecofab	LB 0.5x in EcoFAB_3.5mL	-0.6	N.D.	N.D.	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	N.D.	N.D.	+0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	N.D.	N.D.	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	N.D.	N.D.	+0.1	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	N.D.	N.D.	+0.2	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9	N.D.	N.D.	-0.2	-0.6
solid stress	Fraxetin 3 mM; solid stress	+0.6	N.D.	N.D.	-0.1	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9	N.D.	N.D.	-0.1	-0.5
seeds	Growth on radish seeds for 72 hours	+0.6	N.D.	N.D.	+0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	N.D.	N.D.	+0.4	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	N.D.	N.D.	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	N.D.	N.D.	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	N.D.	N.D.	+0.2	+1.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	N.D.	N.D.	-0.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	N.D.	N.D.	-0.0	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.4	N.D.	N.D.	+0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	N.D.	N.D.	+0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	N.D.	N.D.	+0.4	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	N.D.	N.D.	+0.1	+1.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	N.D.	N.D.	+0.1	+1.4