Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11720	PS417_11725	PS417_11730	PS417_11735	PS417_11740
carbon source	2'-Deoxyinosine 5 mM (C)	-1.1	-0.8	-0.0	-0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.0	-0.7	-0.5	+0.6	N.D.
phage	JP1 MOI 10	+0.3	-0.4	-0.2	-1.1	N.D.
phage	P. simiae OR Antrim MOI 1	+0.7	-0.4	-0.7	-0.3	N.D.
seeds	Growth on radish seeds for 72 hours	+0.7	-0.5	-0.5	-0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.8	-0.5	-0.2	N.D.
phage	JP1 MOI 0.1	+0.5	+0.3	-0.9	-0.2	N.D.
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.7	+0.5	+0.5	-0.3	N.D.
phage	P. simiae ORA MOI 10	+1.1	-1.0	+0.4	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.4	+0.2	+0.4	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.2	+0.4	+1.1	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+1.1	+0.2	-0.7	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	+0.2	+0.6	-1.0	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	+0.8	+0.2	+0.1	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.0	+0.5	+1.4	-0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-0.6	-0.4	+0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.6	-0.7	+0.4	N.D.
phage	P. simiae Grant Run MOI 10	+0.8	-0.0	-0.6	+0.4	N.D.
soil	soil sample 8; outgrowth in LB	-0.7	+1.0	+0.5	-0.1	N.D.
root	root sample 6; outgrowth in LB	+0.7	+0.5	-0.1	-0.5	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.5	+0.4	+0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.6	-0.1	-0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-0.5	+0.6	+0.4	N.D.
seeds	Growth on radish seeds for 72 hours	+0.6	+0.3	-0.6	+0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	-0.6	+0.2	+1.4	N.D.
soil	soil sample 7; outgrowth in LB	+1.0	+0.4	+0.2	-0.5	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	-0.1	+0.9	+0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	+0.6	+0.8	-0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.5	+0.3	+0.2	+0.1	N.D.
phage	P. simiae OR1 MOI 0.1	+1.2	-0.0	+0.6	+0.5	N.D.