Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00110 and PS417_00115 are separated by 130 nucleotidesPS417_00115 and PS417_00120 are separated by 159 nucleotidesPS417_00120 and PS417_00125 overlap by 1 nucleotidesPS417_00125 and PS417_00130 are separated by 36 nucleotides PS417_00110: PS417_00110 - tRNA threonylcarbamoyladenosine biosynthesis protein RimN, at 23,683 to 24,240 _00110 PS417_00115: PS417_00115 - quinone oxidoreductase, at 24,371 to 25,348 _00115 PS417_00120: PS417_00120 - coproporphyrinogen III oxidase, at 25,508 to 26,440 _00120 PS417_00125: PS417_00125 - shikimate dehydrogenase, at 26,440 to 27,258 _00125 PS417_00130: PS417_00130 - SulP family inorganic anion transporter, at 27,295 to 28,887 _00130
Group Condition PS417_00110 PS417_00115 PS417_00120 PS417_00125 PS417_00130
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.2 N.D. N.D. -0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 N.D. N.D. -0.8
phage JP1 MOI 1 N.D. -0.3 N.D. N.D. -0.8
phage Wcs_1 N.D. -0.8 N.D. N.D. -0.3
phage P. simiae OR Antrim MOI 1 N.D. -0.8 N.D. N.D. -0.1
seeds Growth on radish seeds for 72 hours N.D. -0.5 N.D. N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.7 N.D. N.D. +0.1
soil soil sample 5; outgrowth in LB N.D. -0.6 N.D. N.D. +0.3
soil soil sample 4; outgrowth in LB N.D. +0.4 N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 N.D. N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.5 N.D. N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.5 N.D. N.D. +0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -0.4 N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.6 N.D. N.D. -0.5
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. -0.4 N.D. N.D. +0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -0.5 N.D. N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.3 N.D. N.D. +0.6
stress 1-ethyl-3-methylimidazolium acetate 35 mM N.D. -0.4 N.D. N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.5 N.D. N.D. +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 N.D. N.D. +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 N.D. N.D. +0.9
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.9 N.D. N.D. -0.0
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. +0.3 N.D. N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 N.D. N.D. +0.4
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.3 N.D. N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.3 N.D. N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 N.D. N.D. +0.7
stress methylglyoxal 0.032 vol% N.D. +0.5 N.D. N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.1 N.D. N.D. +1.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +0.3 N.D. N.D. +1.6
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