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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2294 and GFF2295 are separated by 255 nucleotides
GFF2295 and GFF2296 overlap by 7 nucleotides
GFF2296 and GFF2297 overlap by 1 nucleotides
GFF2297 and GFF2298 are separated by 7 nucleotides
GFF2294 - LsrR, transcriptional repressor of lsr operon, at 81,210 to 82,169
GFF2294
GFF2295 - Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component, at 82,425 to 83,960
GFF2295
GFF2296 - Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC, at 83,954 to 84,997
GFF2296
GFF2297 - Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD, at 84,997 to 85,995
GFF2297
GFF2298 - Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB, at 86,003 to 87,046
GFF2298
Group
Condition
GFF2294
GFF2295
GFF2296
GFF2297
GFF2298
phage
LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI
-0.4
-0.1
-0.2
-0.1
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.3
+0.0
+0.0
-0.2
-0.4
phage
LB_plus_SM_buffer with EIP16_phage 0.875 MOI
-0.1
-0.1
-0.2
-0.2
+0.0
phage
LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
-0.1
-0.4
+0.0
-0.1
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.1
+0.0
-0.3
+0.0
-0.3
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
-0.1
+0.1
-0.1
-0.2
-0.3
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.2
+0.0
+0.1
-0.1
-0.5
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
-0.2
+0.1
+0.1
-0.2
-0.3
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
-0.2
-0.3
-0.1
-0.1
+0.2
phage
LB_plus_SM_buffer with Ffm_phage 0.01875 MOI
-0.3
-0.1
-0.1
-0.1
+0.1
phage
LB_plus_SM_buffer with Ffm_phage 18.75 MOI
-0.2
-0.2
-0.2
-0.2
+0.2
phage
6H2_phage 10 MOI; agar plate assay
-0.0
+0.1
-0.7
+0.2
-0.2
phage
LB_plus_SM_buffer with Ffm_phage 0.001875 MOI
-0.3
-0.0
+0.1
-0.1
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
-0.2
-0.1
-0.1
-0.1
+0.2
phage
Ffm_phage 10 MOI; agar plate assay
-0.3
-0.3
-0.0
+0.2
+0.1
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
+0.1
-0.0
-0.3
-0.4
+0.5
phage
LB_plus_SM_buffer with phi19h1_phage 15 MOI
-0.3
+0.2
-0.2
+0.2
+0.1
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
+0.0
+0.4
-0.2
-0.3
+0.1
phage
LB_plus_SM_buffer with 6D2_phage 0.75 MOI
-0.1
+0.1
+0.3
-0.1
-0.3
phage
LB_plus_SM_buffer with phi19h1_phage 0.1875 MOI
-0.0
+0.2
+0.2
-0.1
-0.2
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
-0.3
+0.6
-0.2
-0.5
+0.6
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
+0.1
-0.0
+0.3
+0.1
-0.2
phage
6F2_phage 15 MOI
+0.1
-0.2
+0.1
+0.1
+0.2
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
+0.1
+0.2
+0.0
+0.3
-0.2
phage
LB_plus_SM_buffer with 6C2_phage 0.25 MOI
+0.0
-0.1
+0.4
+0.1
-0.0
phage
Br60_phage 15 MOI
+0.0
-0.1
+0.3
+0.3
+0.0
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
-0.5
+0.1
+0.8
+0.1
+0.1
phage
phi19h1_phage 15 MOI
+0.1
-0.1
+0.1
+0.3
+0.1
phage
LB_plus_SM_buffer with P22_phage 15 MOI
+0.4
-0.1
-0.3
+0.3
+0.4
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
-0.1
+0.0
+0.4
+0.5
+0.3
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