Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_11660 and PS417_11665 are separated by 3 nucleotidesPS417_11665 and PS417_11670 are separated by 55 nucleotidesPS417_11670 and PS417_11675 overlap by 17 nucleotidesPS417_11675 and PS417_11680 are separated by 140 nucleotides PS417_11660: PS417_11660 - acylamide amidohydrolase, at 2,508,917 to 2,509,960 _11660 PS417_11665: PS417_11665 - ATPase AAA, at 2,509,964 to 2,510,929 _11665 PS417_11670: PS417_11670 - multidrug transporter MATE, at 2,510,985 to 2,512,340 _11670 PS417_11675: PS417_11675 - TetR family transcriptional regulator, at 2,512,324 to 2,512,911 _11675 PS417_11680: PS417_11680 - MFS transporter, at 2,513,052 to 2,514,224 _11680
Group Condition PS417_11660 PS417_11665 PS417_11670 PS417_11675 PS417_11680
soil soil sample 3; outgrowth in LB -0.4 N.D. -2.0 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. -1.2 N.D. -0.3
phage P. simiae ORA MOI 1 -0.0 N.D. -0.7 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.0 N.D. -0.9 N.D. -0.5
phage P. simiae OR1 MOI 0.1 -0.1 N.D. -1.1 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 N.D. +0.6 N.D. -0.4
seeds Growth on radish seeds for 72 hours -0.2 N.D. +0.7 N.D. -0.8
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 N.D. -0.6 N.D. +0.5
phage JP1 MOI 10 -0.7 N.D. +0.2 N.D. +0.4
phage JP1 MOI 1 -0.0 N.D. -0.6 N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 N.D. +0.8 N.D. -1.0
stress R2A with Fusaric 120 ug/mL -0.2 N.D. +0.9 N.D. -0.3
stress methylglyoxal 0.032 vol% +0.6 N.D. +0.5 N.D. -0.7
phage Wcs_1 +0.1 N.D. +0.8 N.D. -0.4
stress R2A with Fusaric 120 ug/mL -0.1 N.D. +1.1 N.D. -0.4
stress R2A with Fusaric 120 ug/mL -0.3 N.D. +1.0 N.D. -0.1
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 N.D. +0.9 N.D. -0.3
stress R2A with Fusaric 120 ug/mL -0.1 N.D. +1.2 N.D. -0.2
stress R2A with Fusaric 120 ug/mL +0.0 N.D. +1.2 N.D. -0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 N.D. +1.2 N.D. -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 N.D. +0.9 N.D. -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 N.D. +1.1 N.D. -0.1
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) +0.4 N.D. +1.0 N.D. -0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 N.D. +1.1 N.D. +0.4
root root sample 6; outgrowth in LB -0.0 N.D. +1.2 N.D. +0.2
seeds Growth on radish seeds for 72 hours +0.4 N.D. +0.8 N.D. +0.2
ecofab LB in EcoFAB_3.5mL +0.4 N.D. +0.8 N.D. +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. +1.4 N.D. -0.1
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) +0.3 N.D. +1.5 N.D. +0.3
carbon source L-Valine (C) +0.5 N.D. +1.7 N.D. +0.0
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