Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_11620	PS417_11625	PS417_11630	PS417_11635	PS417_11640
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.4	+0.0	N.D.	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.7	-0.4	N.D.	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.4	-0.5	N.D.	-0.6
soil	soil sample 2; outgrowth in LB	-0.4	-0.1	-0.4	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.4	-0.0	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.2	+0.2	N.D.	-0.9
stress	Polymyxin B sulfate 0.006 mg/ml	+0.0	-0.5	-0.3	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	-0.3	+0.1	N.D.	-0.5
soil	soil sample 4; outgrowth in LB	-0.1	-0.3	+0.1	N.D.	-1.0
soil	soil sample 5; outgrowth in LB	-0.5	-0.1	+0.2	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.2	+0.5	N.D.	-1.1
phage	JP1 MOI 0.1	+0.2	-0.6	-0.4	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.4	+0.3	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.5	-0.3	N.D.	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	-0.2	+0.5	N.D.	-0.7
soil	soil sample 7; outgrowth in LB	+0.3	-0.4	+0.1	N.D.	-0.6
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.1	+0.4	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.4	+0.6	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.6	+0.3	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.4	+0.4	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.4	+0.4	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.3	-0.4	N.D.	+0.8
phage	P. simiae ORA MOI 10	+0.3	-0.3	+0.7	N.D.	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.4	+0.2	N.D.	+0.6
seeds	Growth on radish seeds for 72 hours	+0.8	+0.5	-0.5	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.1	+0.0	N.D.	+1.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5	+1.0	-0.1	N.D.	-0.1
phage	P. simiae Grant Run MOI 0.1	+0.3	+0.2	+0.8	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.6	+0.6	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+1.8	-0.1	N.D.	+0.7