Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11610	PS417_11615	PS417_11620	PS417_11625	PS417_11630
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-3.2	-0.4	-0.1	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-2.8	-0.3	-0.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-1.5	-0.6	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	-0.4	-0.5	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-2.5	-0.1	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.5	+0.2	-0.3	-0.2
soil	soil sample 2; outgrowth in LB	N.D.	-0.9	-0.4	-0.1	-0.4
no phage control	Time6-nophage	N.D.	-1.2	-0.2	-0.1	-0.2
liquid stress	Scopoletin 3 mM; liquid stress	N.D.	-1.4	-0.1	-0.2	+0.2
phage	JP1 MOI 0.1	N.D.	-0.6	+0.2	-0.6	-0.4
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	N.D.	-1.1	-0.1	-0.4	+0.2
phage	Wcs_1	N.D.	-1.3	+0.3	-0.4	-0.0
phage	JP1 MOI 10	N.D.	-1.1	+0.5	-0.3	-0.4
soil	soil sample 8; outgrowth in LB	N.D.	-1.6	+0.3	+0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	-1.3	+0.3	+0.1	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-1.2	-0.3	+0.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	-1.3	+0.1	+0.2	+0.3
phage	P. simiae Grant Run MOI 10	N.D.	-1.2	+0.2	-0.3	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.8	-0.3	-0.7	-0.4
seeds	Growth on radish seeds for 72 hours	N.D.	-1.2	+0.8	+0.5	-0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.9	+0.1	+0.8	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.6	+0.2	+0.6	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.7	-0.4	+0.2	+0.3
soil	soil sample 7; outgrowth in LB	N.D.	+1.1	+0.3	-0.4	+0.1
phage	P. simiae Grant Run MOI 10	N.D.	+1.1	+0.2	-0.2	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	N.D.	+0.9	+0.2	-0.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.1	+0.5	+1.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.2	+0.1	+1.8	-0.1
phage	P. simiae ORA MOI 10	N.D.	+0.8	+0.3	-0.3	+0.7
phage	P. simiae ORA MOI 0.1	N.D.	+1.2	+0.2	-0.1	+0.4