Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_11515	PS417_11520	PS417_11525	PS417_11530	PS417_11535
carbon source	D-Sorbitol (C)	-2.0	-6.0	N.D.	-0.1	-0.9
carbon source	D-Sorbitol (C)	-2.4	-5.3	N.D.	-0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.2	N.D.	-0.4	-2.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.5	N.D.	-1.6	-0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.1	-0.5	N.D.	-2.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.1	N.D.	-1.0	-0.8
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	-0.2	-0.6	N.D.	-1.1	-0.2
stress	methylglyoxal 0.032 vol%	+0.1	-1.1	N.D.	-0.6	-0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.1	-0.6	N.D.	-1.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.9	N.D.	-0.2	-1.9
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.2	N.D.	-1.0	-0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.3	N.D.	-1.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.1	N.D.	-0.7	-1.1
carbon source	NAG (C)	+0.0	-0.5	N.D.	-1.2	+0.4
root	root sample 6; outgrowth in LB	+0.2	-1.5	N.D.	-0.8	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.3	N.D.	-0.9	-0.8
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.2	-0.4	N.D.	-1.1	+0.3
soil	soil sample 6; outgrowth in LB	+0.1	-1.1	N.D.	-0.6	+0.7
phage	JP1 MOI 0.1	+0.2	+0.5	N.D.	+0.3	-1.7
carbon source	NAG (C)	+0.3	-0.4	N.D.	-1.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.5	N.D.	-0.5	+0.8
no phage control	Time6-nophage	-0.3	+0.3	N.D.	+0.6	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-0.7	N.D.	-0.3	+0.7
carbon source	L-Valine (C)	+0.3	-0.3	N.D.	-0.9	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	+1.1	N.D.	-0.2	-0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.9	N.D.	-0.7	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.0	+1.2	N.D.	-0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+2.1	N.D.	+0.0	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+2.2	N.D.	-0.4	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.7	+0.3	N.D.	-0.4	+1.4