Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11500	PS417_11505	PS417_11510	PS417_11515	PS417_11520
carbon source	D-Sorbitol (C)	-0.2	-0.1	-2.4	-2.4	-5.3
carbon source	D-Sorbitol (C)	+0.1	+0.1	-1.8	-2.0	-6.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.3	-1.5	-0.1	-1.2
root	root sample 6; outgrowth in LB	-0.2	-0.3	-0.4	+0.2	-1.5
phage	JP1 MOI 1	-0.4	-0.7	-0.8	-0.3	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.4	-1.1	+0.2	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.3	+0.2	-0.2	-1.0
phage	P. simiae ORA MOI 10	+0.0	+0.3	-1.1	-0.4	-0.3
soil	soil sample 2; outgrowth in LB	+0.2	+0.3	-0.9	+0.1	-1.1
carbon source	Carbon source L-Citrulline 10 mM	-0.4	-0.0	-1.2	+0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.2	-0.6	+0.2	-0.7
phage	JP1 MOI 10	-0.1	-0.1	-1.4	-0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.4	-0.2	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.1	+0.7	-0.8	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.4	-0.7	+0.4	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.2	+0.5	-0.3	-0.7
stress	Chloramphenicol 0.015 mg/ml	+0.2	-0.3	+0.8	+0.1	-0.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	-0.1	-1.0	+0.7	+0.3
soil	soil sample 3; outgrowth in LB	-0.2	-0.4	+0.8	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.1	+0.8	+0.3	-0.6
soil	soil sample 5; outgrowth in LB	+0.2	+0.6	+1.2	-0.2	-0.6
phage	P. simiae OR Antrim MOI 10	+0.7	-0.0	+0.9	+0.1	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.4	-0.4	+0.3	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.2	-0.7	+0.2	+2.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	-0.1	+0.3	+0.4	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.2	+1.1	+1.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.0	+0.2	+0.2	+2.1
nitrogen source	Adenosine (N)	+0.2	+3.8	-0.1	-0.2	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	+4.5	+0.7	-0.3	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-1.4	+4.6	+1.2	-0.0	+0.0