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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2243 and GFF2244 overlap by 4 nucleotides
GFF2244 and GFF2245 overlap by 4 nucleotides
GFF2245 and GFF2246 are separated by 36 nucleotides
GFF2246 and GFF2247 are separated by 10 nucleotides
GFF2243 - Ornithine cyclodeaminase (EC 4.3.1.12), at 300,828 to 301,787
GFF2243
GFF2244 - hypothetical protein, at 301,784 to 302,647
GFF2244
GFF2245 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 302,644 to 303,219
GFF2245
GFF2246 - cellular communication/signal transduction, at 303,256 to 303,612
GFF2246
GFF2247 - hypothetical protein, at 303,623 to 304,150
GFF2247
Group
Condition
GFF2243
GFF2244
GFF2245
GFF2246
GFF2247
complex community
Community=guar; Passage=4
-0.9
-0.8
-0.3
+0.1
-0.2
complex community
Community=arabino-guar; Passage=4
-0.9
+0.1
-0.1
-1.1
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.2
-0.3
-0.4
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
-0.2
-0.2
-0.8
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.4
-0.3
-0.5
-0.2
-0.1
complex community
Community=guar; Passage=4
-0.5
+0.2
-0.1
-0.5
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.5
+0.1
-0.0
-0.5
-0.3
no phage control
no phage control
-0.2
-0.1
-0.5
+0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.5
-0.4
-0.3
+0.6
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
+0.1
-0.4
+0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.5
+0.1
-0.2
-0.4
+0.3
complex community
Community=Kojac gum; Passage=1
-0.0
+0.3
-0.2
-0.2
-0.7
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-0.2
-0.5
+0.3
+0.0
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
-0.3
-0.3
-0.5
+0.3
complex community
Community=arabino-guar; Passage=4
-1.0
+0.2
-0.4
+0.1
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
-0.1
-0.6
+0.1
+0.4
complex community
Community=guar; Passage=4
+1.0
-0.0
-0.1
-1.5
+0.1
complex community
Community=Locust bean gum; Passage=4
-2.1
+0.6
+0.0
+0.3
+0.8
complex community
Community=Locust bean gum; Passage=4
+0.3
-0.5
+0.0
-0.4
+0.3
phage
phage_bap4
+0.8
-0.1
-0.1
-0.1
-0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.4
-0.3
-0.3
+0.0
+0.3
complex community
Community=Locust bean gum; Passage=4
+0.7
+0.1
-0.7
-0.4
+0.6
complex community
Community=arabino-guar; Passage=4
+0.5
-0.2
+0.0
-0.6
+0.6
complex community
Community=Kojac gum; Passage=4
+0.2
+1.1
-0.1
+0.5
-1.1
phage
phage_bap4
+0.6
+0.2
-0.3
+0.3
+0.1
phage
phage_bap4
+1.4
+0.1
-0.4
+0.3
-0.4
complex community
Community=arabino-guar; Passage=4
-0.4
+1.0
+0.2
-0.2
+0.6
phage
phage_bap4
+1.4
-0.2
-0.2
-0.2
+0.4
phage
phage_bap4
+1.6
-0.0
-0.1
+0.3
-0.4
phage
phage_bap4
+1.1
+0.1
-0.1
+0.4
+0.3
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