Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2243 and GFF2244 overlap by 4 nucleotidesGFF2244 and GFF2245 overlap by 4 nucleotidesGFF2245 and GFF2246 are separated by 36 nucleotidesGFF2246 and GFF2247 are separated by 10 nucleotides GFF2243 - Ornithine cyclodeaminase (EC 4.3.1.12), at 300,828 to 301,787 GFF2243 GFF2244 - hypothetical protein, at 301,784 to 302,647 GFF2244 GFF2245 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 302,644 to 303,219 GFF2245 GFF2246 - cellular communication/signal transduction, at 303,256 to 303,612 GFF2246 GFF2247 - hypothetical protein, at 303,623 to 304,150 GFF2247
Group Condition GFF2243 GFF2244 GFF2245 GFF2246 GFF2247
complex community Community=guar; Passage=4 -0.9 -0.8 -0.3 +0.1 -0.2
complex community Community=arabino-guar; Passage=4 -0.9 +0.1 -0.1 -1.1 +0.0
complex community Community=Locust bean gum; Passage=4 -0.4 +0.2 -0.3 -0.4 -0.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 -0.2 -0.2 -0.8 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 -0.3 -0.5 -0.2 -0.1
complex community Community=guar; Passage=4 -0.5 +0.2 -0.1 -0.5 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL -0.5 +0.1 -0.0 -0.5 -0.3
no phage control no phage control -0.2 -0.1 -0.5 +0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.5 -0.4 -0.3 +0.6 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.5 +0.1 -0.4 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.5 +0.1 -0.2 -0.4 +0.3
complex community Community=Kojac gum; Passage=1 -0.0 +0.3 -0.2 -0.2 -0.7
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.2 -0.5 +0.3 +0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 -0.3 -0.3 -0.5 +0.3
complex community Community=arabino-guar; Passage=4 -1.0 +0.2 -0.4 +0.1 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 -0.1 -0.6 +0.1 +0.4
complex community Community=guar; Passage=4 +1.0 -0.0 -0.1 -1.5 +0.1
complex community Community=Locust bean gum; Passage=4 -2.1 +0.6 +0.0 +0.3 +0.8
complex community Community=Locust bean gum; Passage=4 +0.3 -0.5 +0.0 -0.4 +0.3
phage phage_bap4 +0.8 -0.1 -0.1 -0.1 -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.4 -0.3 -0.3 +0.0 +0.3
complex community Community=Locust bean gum; Passage=4 +0.7 +0.1 -0.7 -0.4 +0.6
complex community Community=arabino-guar; Passage=4 +0.5 -0.2 +0.0 -0.6 +0.6
complex community Community=Kojac gum; Passage=4 +0.2 +1.1 -0.1 +0.5 -1.1
phage phage_bap4 +0.6 +0.2 -0.3 +0.3 +0.1
phage phage_bap4 +1.4 +0.1 -0.4 +0.3 -0.4
complex community Community=arabino-guar; Passage=4 -0.4 +1.0 +0.2 -0.2 +0.6
phage phage_bap4 +1.4 -0.2 -0.2 -0.2 +0.4
phage phage_bap4 +1.6 -0.0 -0.1 +0.3 -0.4
phage phage_bap4 +1.1 +0.1 -0.1 +0.4 +0.3
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