Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01125	PS417_01130	PS417_01135	PS417_01140	PS417_01145
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.6	-0.5	-0.9	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.3	+0.4	-1.4	-2.6
seeds	Growth on radish seeds for 72 hours	-0.0	-0.5	-0.5	+0.2	-3.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-1.4	-0.5	-0.2	-1.0
nophagecontrol	Only library	-0.4	-3.2	+0.3	-0.5	+1.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.6	-0.4	+0.0	+0.1	-3.1
soil	soil sample 8; outgrowth in LB	-0.0	-0.8	+0.2	+0.3	-2.3
phage	P. simiae ORA MOI 0.1	+0.1	-0.2	-0.2	-0.1	-2.2
phage	P. simiae OR1 MOI 0.1	+0.2	-0.9	-1.1	+0.3	-1.0
phage	P. simiae Grant Run MOI 0.1	+0.3	+0.1	+0.0	-0.4	-2.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.3	-0.3	-0.3	-1.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-1.0	+0.7	-0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.7	-0.1	+0.6	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.4	+0.4	+0.3	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.6	-1.1	-0.8	+0.9
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.2	+0.5	+0.8	-0.2	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.1	-0.7	+0.7	+0.8
seeds	Growth on radish seeds for 72 hours	+0.6	-0.3	-0.6	-0.6	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.5	+0.1	-0.7	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.2	+0.7	-1.1	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	+0.7	-0.8	+1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.3	+1.3	-0.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+1.5	+0.8	-0.2	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+1.0	+0.7	+0.6	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.3	+1.0	+0.4	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	+1.2	-0.2	-0.2	+1.2
stress	Gentamicin 0.008 mg/ml	+0.3	+0.6	-0.0	-0.5	+1.5
phage	P. simiae OR Antrim MOI 0.1	+0.2	-0.1	-0.5	+0.3	+2.3
phage	JP1 MOI 0.1	+0.1	+0.3	+1.1	-0.1	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+2.2	+1.2	-0.3	+0.4