Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11390	PS417_11395	PS417_11400	PS417_11405	PS417_11410
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.3	-3.5	-0.6	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	-0.1	-3.4	+0.2	-0.4
phage	P. simiae OR Antrim MOI 1	+0.5	-0.6	-3.9	+0.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.1	-1.8	-0.4	-1.0
soil	soil sample 7; outgrowth in LB	-1.1	-0.2	-1.5	-0.4	-0.3
liquid stress	Scopoletin 3 mM; liquid stress	-0.6	-0.1	-2.8	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.3	-3.0	+0.3	-0.2
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.1	-0.3	-2.0	-0.1	-0.8
phage	P. simiae OR Antrim MOI 10	+0.3	+0.4	-3.8	-0.0	+0.1
soil	soil sample 5; outgrowth in LB	+0.0	-0.7	-2.1	-0.7	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.4	-1.3	-1.5	+1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.5	-0.4	-1.5	-0.5
nitrogen source	Adenosine (N)	+0.3	+0.3	-0.3	-2.1	-0.4
soil	soil sample 2; outgrowth in LB	-1.2	+0.5	-0.9	-0.6	-0.0
stress	1-ethyl-3-methylimidazolium acetate 35 mM	+0.2	+0.3	-2.0	-0.5	-0.2
carbon source	D-Fructose (C)	-0.6	+0.3	-1.5	+0.1	-0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.3	+0.3	-2.6	-0.1	-0.1
phage	P. simiae OR Antrim MOI 1	-0.3	-0.1	-2.3	+0.9	-0.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.8	-0.3	+0.7	-0.8	-0.7
carbon source	Gly-Glu (C)	-0.3	-0.5	+0.7	-1.4	-0.3
phage	JP1 MOI 10	-0.1	-0.0	-2.1	-0.1	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.6	-0.5	-1.1	+0.7
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.4	+0.5	-1.6	-0.2	+0.5
carbon source	L-Valine (C)	-0.2	-0.1	+1.0	-0.3	-1.6
phage	P. simiae OR1 MOI 0.1	-0.7	-0.7	+1.4	-0.6	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+0.5	-0.8	+0.3	+1.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-1.1	+1.3	-0.1	+0.2
phage	JP1 MOI 10	-0.3	+0.0	+1.2	-1.2	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	+2.9	-0.2	-0.4
nitrogen source	Glycine (N)	+0.4	+0.2	-0.4	+3.0	+0.3