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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2229 and GFF2230 are separated by 136 nucleotides
GFF2230 and GFF2231 overlap by 4 nucleotides
GFF2231 and GFF2232 are separated by 34 nucleotides
GFF2232 and GFF2233 are separated by 121 nucleotides
GFF2229 - Pca regulon regulatory protein PcaR, at 291,162 to 291,947
GFF2229
GFF2230 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6), at 292,084 to 292,785
GFF2230
GFF2231 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6), at 292,782 to 293,429
GFF2231
GFF2232 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ 3-oxoadipyl-CoA thiolase (EC 2.3.1.174), at 293,464 to 294,669
GFF2232
GFF2233 - hypothetical protein, at 294,791 to 295,810
GFF2233
Group
Condition
GFF2229
GFF2230
GFF2231
GFF2232
GFF2233
complex community
Community=guar; Passage=4
-0.4
-0.0
-3.9
+0.4
-0.2
complex community
Community=arabino-guar; Passage=4
-0.9
-1.5
-1.7
+0.6
-0.1
complex community
Community=guar; Passage=4
+0.1
-2.2
+0.4
-0.1
-0.2
complex community
Community=guar; Passage=4
-0.1
-1.1
-1.1
+0.3
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.1
-1.0
+0.1
-0.4
complex community
Community=Locust bean gum; Passage=4
-1.8
+0.3
+0.5
-1.2
+0.6
complex community
Community=Locust bean gum; Passage=4
-0.7
+0.1
-0.5
-0.7
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.5
-0.6
-0.2
+0.1
complex community
Community=arabino-guar; Passage=4
-1.4
+0.1
+0.0
-0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.3
+0.1
-0.8
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
-0.5
-0.0
-0.3
+0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.4
-0.2
+0.2
-0.5
complex community
Community=Locust bean gum; Passage=4
-1.2
-1.0
+0.5
+0.1
+0.7
complex community
Community=Kojac gum; Passage=4
-0.1
-0.2
-0.7
+0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
+0.1
-0.6
-0.3
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.6
+0.2
-0.7
-0.0
+0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.5
-0.1
-0.5
-0.1
+0.4
complex community
Community=Locust bean gum; Passage=1
-0.1
-0.5
-0.4
+0.2
+0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.5
-0.9
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.4
+0.4
-0.7
+0.1
+0.1
phage
phage_bap4
-0.3
+0.4
-0.6
+0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.4
+0.8
-0.1
-0.0
complex community
Community=arabino-guar; Passage=4
-0.7
+1.2
-0.2
+0.0
+0.4
phage
phage_bap4
-0.2
+0.2
+0.3
+0.6
-0.2
phage
phage_bap4
-0.5
-0.1
+0.6
+0.4
+0.2
complex community
Community=Kojac gum; Passage=1
-0.2
-0.1
+0.3
+0.8
+0.0
complex community
Community=guar; Passage=4
-0.6
-0.3
+0.6
+0.5
+0.8
phage
phage_bap4
+0.1
+0.5
+0.7
-0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.0
-0.6
+1.2
+0.2
+0.5
complex community
Community=arabino-guar; Passage=4
-0.5
+1.2
+1.3
-0.4
-0.1
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