Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11360	PS417_11365	PS417_11370	PS417_11375	PS417_11380
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.3	N.D.	-3.8	-0.8
phage	P. simiae Grant Run MOI 0.1	-0.6	-0.5	N.D.	-1.0	-1.4
seeds	Growth on radish seeds for 72 hours	+0.1	+0.1	N.D.	-1.8	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.2	N.D.	-1.4	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.1	N.D.	-1.3	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.3	N.D.	-1.2	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-0.3	N.D.	-1.0	-0.2
solid stress	Fraxetin 3 mM; solid stress	-0.8	+0.2	N.D.	-0.2	-1.1
phage	P. simiae ORA MOI 0.1	-0.5	-0.4	N.D.	-0.7	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.3	N.D.	-1.1	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.3	N.D.	-1.0	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.3	N.D.	-0.8	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	-0.4	N.D.	+0.7	-1.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.7	-0.2	N.D.	+0.6	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.3	N.D.	-0.9	+0.4
stress	Doxycycline hyclate 0.001 mg/ml	+0.4	-0.1	N.D.	-0.7	-0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.1	+0.1	N.D.	+0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.3	N.D.	-0.7	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.3	N.D.	-0.2	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.6	N.D.	-0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	-0.4	N.D.	+0.8	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.4	N.D.	-1.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.2	N.D.	-1.0	+1.1
carbon source	L-Valine (C)	+0.6	-0.4	N.D.	+0.3	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	-0.5	N.D.	+0.4	+0.5
seeds	Growth on radish seeds for 72 hours	+0.4	+0.3	N.D.	-1.3	+0.6
phage	P. simiae Grant Run MOI 10	+1.2	-0.6	N.D.	-0.6	+0.1
carbon source	L-Valine (C)	-0.7	+0.1	N.D.	-0.2	+1.5
solid stress	Fraxetin 3 mM; solid stress	-0.9	+0.3	N.D.	+0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.7	+1.1	N.D.	+1.3	-0.6