Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF2228 and GFF2229 are separated by 79 nucleotidesGFF2229 and GFF2230 are separated by 136 nucleotidesGFF2230 and GFF2231 overlap by 4 nucleotidesGFF2231 and GFF2232 are separated by 34 nucleotides GFF2228 - glycerophosphoryl diester phosphodiesterase, at 289,607 to 291,082 GFF2228 GFF2229 - Pca regulon regulatory protein PcaR, at 291,162 to 291,947 GFF2229 GFF2230 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6), at 292,084 to 292,785 GFF2230 GFF2231 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6), at 292,782 to 293,429 GFF2231 GFF2232 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ 3-oxoadipyl-CoA thiolase (EC 2.3.1.174), at 293,464 to 294,669 GFF2232
Group Condition GFF2228 GFF2229 GFF2230 GFF2231 GFF2232
complex community Community=guar; Passage=4 -0.1 -0.4 -0.0 -3.9 +0.4
complex community Community=arabino-guar; Passage=4 -0.2 -0.9 -1.5 -1.7 +0.6
complex community Community=guar; Passage=4 -0.3 -0.1 -1.1 -1.1 +0.3
complex community Community=guar; Passage=4 -0.4 +0.1 -2.2 +0.4 -0.1
complex community Community=Locust bean gum; Passage=4 +0.2 -1.8 +0.3 +0.5 -1.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.2 -0.5 -0.6 -0.2
complex community Community=arabino-guar; Passage=4 -0.4 -1.4 +0.1 +0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 -0.6 -0.5 -0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.3 -0.1 -1.0 +0.1
complex community Community=Locust bean gum; Passage=4 +0.3 -0.7 +0.1 -0.5 -0.7
complex community Community=Kojac gum; Passage=4 -0.6 -0.1 -0.2 -0.7 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.5 -0.1 -0.5 -0.1
complex community Community=Locust bean gum; Passage=4 +0.4 -1.2 -1.0 +0.5 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.3 +0.1 -0.8 -0.2
vitamin M9 with Supernatant from Cyptococcus +0.0 -0.6 +0.2 -0.7 -0.0
no phage control no phage control -0.2 +0.0 +0.2 -0.7 -0.1
complex community Community=Locust bean gum; Passage=1 +0.1 -0.1 -0.5 -0.4 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 -0.1 +0.5 -0.9 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.1 +0.0 -0.8 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 +0.2 +0.1 -0.6 -0.3
phage phage_bap4 -0.2 -0.3 +0.4 -0.6 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 -0.4 +0.4 -0.7 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.1 -0.4 +0.8 -0.1
complex community Community=Locust bean gum; Passage=4 -0.5 -0.0 -0.6 +1.2 +0.2
complex community Community=guar; Passage=4 +0.2 -0.6 -0.3 +0.6 +0.5
complex community Community=arabino-guar; Passage=4 +0.2 -0.7 +1.2 -0.2 +0.0
complex community Community=Kojac gum; Passage=1 -0.3 -0.2 -0.1 +0.3 +0.8
phage phage_bap4 +0.1 -0.5 -0.1 +0.6 +0.4
phage phage_bap4 -0.0 +0.1 +0.5 +0.7 -0.1
complex community Community=arabino-guar; Passage=4 +0.2 -0.5 +1.2 +1.3 -0.4
remove
GFF2228
plot
remove
GFF2229
plot
remove
GFF2230
remove
GFF2231
plot
remove
GFF2232
plot