Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11340	PS417_11345	PS417_11350	PS417_11355	PS417_11360
phage	JP1 MOI 10	-0.7	-0.5	-1.1	N.D.	-0.4
phage	JP1 MOI 1	-1.2	-0.6	-0.4	N.D.	-0.4
root	root sample 6; outgrowth in LB	+0.1	-0.5	-0.9	N.D.	-0.9
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.3	-0.4	N.D.	-1.1
motility	inner cut, LB soft agar motility assay	-0.5	-0.8	-0.3	N.D.	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	+0.1	-0.5	N.D.	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	-0.6	-0.2	N.D.	-0.7
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-0.8	-0.4	+0.1	N.D.	-0.8
carbon source	octanoate (C)	-0.3	-0.7	+0.1	N.D.	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	-0.8	-0.7	N.D.	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.2	-0.4	-0.5	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-1.0	+1.1	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.1	-0.3	N.D.	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.5	-0.4	N.D.	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.2	+0.4	-0.0	N.D.	+0.3
soil	soil sample 5; outgrowth in LB	-0.6	+0.3	-0.8	N.D.	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	+0.3	-1.2	N.D.	-0.2
soil	soil sample 4; outgrowth in LB	-0.1	+0.8	-0.6	N.D.	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.6	+0.5	N.D.	-0.4
phage	P. simiae OR Antrim MOI 1	+0.0	-1.2	+0.7	N.D.	+0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.6	+0.2	+0.5	N.D.	-0.4
phage	Wcs_0.1	-0.6	-0.2	+0.9	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.8	-0.2	+0.4	N.D.	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.4	-1.0	N.D.	+0.4
phage	JP1 MOI 10	-0.8	+0.5	+1.6	N.D.	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.6	+0.4	N.D.	-0.7
seeds	Growth on radish seeds for 72 hours	-0.5	-0.3	+1.0	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.8	+0.4	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.4	-0.5	-0.2	N.D.	-0.1
phage	P. simiae Grant Run MOI 10	-0.1	+0.2	-0.3	N.D.	+1.2