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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF2222 and GFF2223 overlap by 4 nucleotides
GFF2223 and GFF2224 are separated by 76 nucleotides
GFF2224 and GFF2225 are separated by 378 nucleotides
GFF2225 and GFF2226 are separated by 133 nucleotides
GFF2222 - PutR, transcriptional activator of PutA and PutP, at 2,241,669 to 2,242,154
GFF2222
GFF2223 - hypothetical protein, at 2,242,151 to 2,242,354
GFF2223
GFF2224 - putative secreted protein, at 2,242,431 to 2,243,660
GFF2224
GFF2225 - TonB-dependent receptor, at 2,244,039 to 2,246,903
GFF2225
GFF2226 - beta-galactosidase (EC 3.2.1.23), at 2,247,037 to 2,249,718
GFF2226
Group
Condition
GFF2222
GFF2223
GFF2224
GFF2225
GFF2226
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-1.1
+0.2
+0.0
-0.0
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.4
-0.3
+0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.2
-0.1
-0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
-0.1
-0.0
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.3
-0.1
-0.0
+0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
+0.1
-0.0
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.1
-0.0
-0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.3
+0.2
-0.1
-0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.1
-0.1
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.3
+0.2
-0.1
-0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.4
-0.3
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
+0.2
-0.0
+0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.2
-0.1
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.2
+0.0
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
+0.3
+0.1
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
+0.5
-0.0
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.5
+0.0
-0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.6
+0.1
+0.0
+0.0
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