Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11265	PS417_11270	PS417_11275	PS417_11280	PS417_11285
phage	P. simiae OR1 MOI 0.1	N.D.	N.D.	-1.2	-0.3	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.3	-1.0	N.D.
phage	JP1 MOI 1	N.D.	N.D.	-0.4	-0.7	N.D.
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.7	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.6	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.9	-0.2	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	N.D.	-1.0	+0.3	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	-0.9	+0.4	N.D.
carbon source	L-Valine (C)	N.D.	N.D.	+0.4	-0.8	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.4	-0.7	N.D.
soil	soil sample 5; outgrowth in LB	N.D.	N.D.	-0.7	+0.5	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	N.D.	-0.6	+0.4	N.D.
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	-1.2	+1.0	N.D.
phage	P. simiae OR Antrim MOI 10	N.D.	N.D.	-0.6	+0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.7	+0.7	N.D.
motility	outer cut, LB soft agar motility assay	N.D.	N.D.	+0.5	-0.6	N.D.
carbon source	RCH2_defined_glucose with MS_media 1x	N.D.	N.D.	-0.5	+0.5	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	N.D.	N.D.	-0.6	+0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.8	-0.5	N.D.
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2	N.D.	N.D.	+0.7	-0.4	N.D.
phage	P. simiae OR Antrim MOI 10	N.D.	N.D.	-0.3	+0.8	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	-0.2	+0.9	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.7	+0.3	N.D.
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	N.D.	+0.3	+0.8	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	N.D.	+0.3	+0.8	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+1.0	+0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.6	+0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	+0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+1.0	+0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	+1.4	+0.8	N.D.