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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF218 and GFF219 are separated by 122 nucleotides
GFF219 and GFF220 overlap by 4 nucleotides
GFF220 and GFF221 are separated by 2 nucleotides
GFF221 and GFF222 are separated by 21 nucleotides
GFF218 - hypothetical protein, at 241,454 to 242,956
GFF218
GFF219 - GTP-binding protein TypA/BipA, at 243,079 to 244,917
GFF219
GFF220 - tRNA pseudouridine(55) synthase (EC 5.4.99.25), at 244,914 to 245,879
GFF220
GFF221 - Ribosome-binding factor A, at 245,882 to 246,253
GFF221
GFF222 - Translation initiation factor 2, at 246,275 to 249,256
GFF222
Group
Condition
GFF218
GFF219
GFF220
GFF221
GFF222
complex community
Community=Locust bean gum; Passage=4
-0.2
-3.4
-0.3
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
+0.5
-3.2
-0.2
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.0
-2.5
-0.1
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
+0.1
-2.4
-0.1
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.7
-1.6
-0.0
N.D.
N.D.
complex community
Community=guar; Passage=4
-0.4
-2.1
+0.2
N.D.
N.D.
complex community
Community=guar; Passage=4
+0.1
-2.1
-0.2
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.0
-1.9
-0.0
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
+0.5
-2.7
+0.3
N.D.
N.D.
phage
phage_bap4
-0.1
-1.6
-0.2
N.D.
N.D.
no phage control
no phage control
-0.0
-1.5
-0.3
N.D.
N.D.
complex community
Community=Kojac gum; Passage=4
-0.0
-1.2
-0.6
N.D.
N.D.
phage
phage_bap4
-0.1
-1.2
-0.5
N.D.
N.D.
no phage control
no phage control
+0.0
-1.4
-0.4
N.D.
N.D.
no phage control
no phage control
+0.2
-1.7
-0.2
N.D.
N.D.
complex community
Community=guar; Passage=4
-0.2
-1.0
-0.4
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-1.2
-0.4
N.D.
N.D.
phage
phage_bap4
-0.3
-1.0
-0.3
N.D.
N.D.
phage
phage_bap4
-0.2
-1.1
-0.3
N.D.
N.D.
no phage control
no phage control
+0.2
-1.5
-0.3
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
-1.6
-0.2
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-1.3
-0.4
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-1.2
-0.1
N.D.
N.D.
complex community
Community=guar; Passage=4
+0.3
-1.4
-0.4
N.D.
N.D.
phage
phage_bap4
-0.1
-1.0
-0.3
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
+0.2
-1.2
-0.3
N.D.
N.D.
phage
phage_bap4
+0.1
-0.9
-0.4
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.2
-1.2
-0.0
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
-0.8
-0.3
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.9
+0.2
N.D.
N.D.
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