Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11200	PS417_11205	PS417_11210	PS417_11215	PS417_11220
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	N.D.	N.D.	-0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	N.D.	N.D.	-0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	-0.5	-0.4
carbon source	Carbon source D-Mannitol 10 mM	-0.4	N.D.	N.D.	-0.6	-0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	-0.6	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	N.D.	N.D.	-0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	N.D.	N.D.	-0.9	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	N.D.	-0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	N.D.	N.D.	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	N.D.	N.D.	-0.1	-0.4
phage	Wcs_1	+0.1	N.D.	N.D.	-0.6	-0.4
no phage control	Time6-nophage	+0.1	N.D.	N.D.	-0.7	-0.3
phage	P. simiae OR1 MOI 0.1	+0.5	N.D.	N.D.	-0.7	-0.4
phage	JP1 MOI 1	-0.3	N.D.	N.D.	-0.6	+0.4
seeds	Growth on radish seeds for 72 hours	-0.7	N.D.	N.D.	+0.3	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	N.D.	N.D.	+0.7	-0.2
phage	P. simiae Grant Run MOI 10	+0.5	N.D.	N.D.	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	N.D.	+0.6	-0.1
carbon source	L-Valine (C)	+0.2	N.D.	N.D.	-0.5	+0.3
seeds	Growth on radish seeds for 72 hours	-0.4	N.D.	N.D.	+0.4	+0.3
stress	methylglyoxal 0.032 vol%	-0.5	N.D.	N.D.	+0.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.0	N.D.	N.D.	+0.7	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.3	N.D.	N.D.	+0.6	+0.2
stress	Doxycycline hyclate 0.001 mg/ml	+0.4	N.D.	N.D.	+0.4	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+0.5	N.D.	N.D.	+0.6	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	N.D.	N.D.	+0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.0	N.D.	N.D.	+0.9	+0.3
seeds	Growth on radish seeds for 72 hours	-0.1	N.D.	N.D.	+0.5	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	N.D.	N.D.	+1.1	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	N.D.	N.D.	+0.3	+0.3