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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2190 and GFF2191 are separated by 104 nucleotides
GFF2191 and GFF2192 are separated by 0 nucleotides
GFF2192 and GFF2193 are separated by 300 nucleotides
GFF2193 and GFF2194 are separated by 84 nucleotides
GFF2190 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 246,033 to 246,758
GFF2190
GFF2191 - Pca operon transcriptional activator PcaQ, at 246,863 to 247,864
GFF2191
GFF2192 - FIG00932626: hypothetical protein, at 247,865 to 248,299
GFF2192
GFF2193 - PE_PGRS, at 248,600 to 252,736
GFF2193
GFF2194 - Tol-Pal system peptidoglycan-associated lipoprotein PAL, at 252,821 to 253,324
GFF2194
Group
Condition
GFF2190
GFF2191
GFF2192
GFF2193
GFF2194
complex community
Community=Locust bean gum; Passage=4
-0.3
-2.8
-1.7
-0.2
+0.4
complex community
Community=Locust bean gum; Passage=4
-0.5
+0.6
-4.4
+0.4
+0.0
complex community
Community=arabino-guar; Passage=4
-0.7
-1.6
-2.2
+0.3
+0.4
complex community
Community=Kojac gum; Passage=4
-0.1
-0.2
-2.5
-0.5
+0.1
complex community
Community=guar; Passage=4
-0.2
-0.2
-2.9
-0.3
+0.3
complex community
Community=arabino-guar; Passage=4
-0.1
+0.5
-2.7
-0.8
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.5
-3.1
-0.0
+0.1
complex community
Community=arabino-guar; Passage=4
-0.5
-0.4
-2.2
+0.3
+0.2
complex community
Community=guar; Passage=4
-0.4
-1.5
-1.0
+0.4
+0.1
complex community
Community=guar; Passage=4
-0.4
-0.9
-1.0
-0.4
+0.3
complex community
Community=arabino-guar; Passage=4
-0.2
-0.6
-0.9
-0.2
-0.2
phage
phage_bap4
-0.1
-0.6
-0.9
-0.4
+0.0
complex community
Community=guar; Passage=4
-0.2
-0.2
-1.7
-0.2
+0.4
phage
phage_bap4
-0.1
-0.2
-1.0
-0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
-0.3
-0.9
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-1.2
-0.0
+0.2
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-1.3
+0.2
+0.1
-0.0
no phage control
no phage control
+0.1
-0.2
-1.0
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.4
-0.9
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.5
+0.3
-0.3
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
+0.4
-1.0
+0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.2
-0.5
+0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
+0.0
-0.7
+0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
-0.9
+0.2
+0.2
+0.2
complex community
Community=Locust bean gum; Passage=1
+0.2
-0.8
+0.5
+0.0
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.6
+0.7
-1.1
+0.3
+0.7
phage
phage_bap4
-0.1
+0.4
+0.1
-0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.4
-0.1
+0.3
+0.0
phage
phage_bap4
+0.0
+0.5
+0.2
-0.0
+0.3
phage
phage_bap4
+0.0
+0.6
+0.3
-0.0
+0.4
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