Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11165	PS417_11170	PS417_11175	PS417_11180	PS417_11185
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.0	-1.6	-1.0	-1.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	N.D.	+0.3	-1.7	-1.6	-0.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-0.1	-1.5	-0.9	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-0.8	-0.9	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.0	-0.9	-1.0	-0.5
soil	soil sample 8; outgrowth in LB	N.D.	+0.8	-0.9	-1.9	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-1.5	-0.5	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.0	-0.8	-0.2	-1.3
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	N.D.	+0.2	-1.9	-0.3	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	N.D.	+0.2	-0.9	-1.0	-0.4
carbon source	RCH2_defined_glucose with MS_media 1x	N.D.	+0.1	-1.1	-0.6	-0.5
seeds	Growth on radish seeds for 24 hours	N.D.	+0.2	-1.7	-0.9	+0.6
phage	Wcs_1	N.D.	-0.5	-0.4	+0.3	-1.2
phage	JP1 MOI 0.1	N.D.	+0.3	-1.4	-0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-1.4	+0.1	+0.6
soil	soil sample 2; outgrowth in LB	N.D.	+0.9	-1.4	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-1.5	-0.4	+0.6
seeds	Growth on radish seeds for 72 hours	N.D.	-0.2	-1.1	-0.2	+1.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	+1.0	-0.4	-0.7	-0.2
carbon source	Carbon source L-Ornithine 10 mM	N.D.	+0.1	-1.1	+0.5	+0.7
seeds	Growth on radish seeds for 72 hours	N.D.	+0.1	-0.0	-1.0	+1.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	+1.3	+0.4	-0.2	-0.6
soil	soil sample 7; outgrowth in LB	N.D.	+0.9	+0.8	-0.3	-0.3
phage	JP1 MOI 10	N.D.	+0.5	-0.4	+0.6	+1.3
phage	P. simiae OR Antrim MOI 0.1	N.D.	-0.1	+0.6	+1.2	+0.4
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.2	+0.9	+0.7	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.3	+2.5	+0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.4	+0.2	+0.9	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.5	-0.0	+0.2	+2.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	+1.5	+0.4	+1.4