Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2188 and GFF2189 are separated by 68 nucleotidesGFF2189 and GFF2190 are separated by 17 nucleotidesGFF2190 and GFF2191 are separated by 104 nucleotidesGFF2191 and GFF2192 are separated by 0 nucleotides GFF2188 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 244,646 to 245,338 GFF2188 GFF2189 - Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3), at 245,407 to 246,015 GFF2189 GFF2190 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 246,033 to 246,758 GFF2190 GFF2191 - Pca operon transcriptional activator PcaQ, at 246,863 to 247,864 GFF2191 GFF2192 - FIG00932626: hypothetical protein, at 247,865 to 248,299 GFF2192
Group Condition GFF2188 GFF2189 GFF2190 GFF2191 GFF2192
complex community Community=Locust bean gum; Passage=4 +0.2 -3.6 -0.3 +0.5 -3.1
complex community Community=arabino-guar; Passage=4 -0.1 -1.3 -0.7 -1.6 -2.2
complex community Community=Locust bean gum; Passage=4 +0.1 -0.4 -0.3 -2.8 -1.7
complex community Community=Kojac gum; Passage=4 +0.2 -2.4 -0.1 -0.2 -2.5
complex community Community=Locust bean gum; Passage=4 +0.0 -0.6 -0.5 +0.6 -4.4
complex community Community=guar; Passage=4 +0.0 -0.4 -0.2 -0.2 -2.9
complex community Community=guar; Passage=4 -0.0 -1.4 -0.2 -0.2 -1.7
complex community Community=arabino-guar; Passage=4 -0.2 -0.2 -0.5 -0.4 -2.2
complex community Community=arabino-guar; Passage=4 +0.1 -1.1 -0.1 +0.5 -2.7
complex community Community=guar; Passage=4 -0.1 -0.2 -0.4 -1.5 -1.0
complex community Community=guar; Passage=4 -0.2 -0.1 -0.4 -0.9 -1.0
complex community Community=arabino-guar; Passage=4 -0.4 -0.4 -0.2 -0.6 -0.9
phage phage_bap4 -0.0 -0.2 -0.1 -0.6 -0.9
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 -0.1 -0.1 -1.2 -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 +0.2 -0.2 -0.3 -0.9
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 -0.7 +0.0 -0.2 -0.2
no phage control no phage control -0.0 -0.1 +0.1 -0.2 -1.0
phage phage_bap4 -0.0 +0.1 -0.1 -0.2 -1.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.5 -0.1 -0.5 +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 -0.6 +0.0 +0.1 -0.3
phage phage_bap4 -0.1 -0.2 +0.1 -0.1 -0.7
complex community Community=Locust bean gum; Passage=4 +0.1 -0.0 -0.6 +0.7 -1.1
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.3 -0.0 -1.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 -0.4 +0.0 +0.2 -0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.1 +0.1 -0.1 -0.9 +0.2
complex community Community=Locust bean gum; Passage=1 -0.2 -0.4 +0.2 -0.8 +0.5
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.1 +0.0 +0.4 -1.0
complex community Community=Kojac gum; Passage=1 -0.2 -0.5 +0.2 +0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.6 -0.0 +0.4 -0.9
phage phage_bap4 -0.1 -0.5 +0.0 +0.6 +0.3
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