Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01100	PS417_01105	PS417_01110	PS417_01115	PS417_01120
phage	JP1 MOI 1	-0.2	+0.1	-0.2	-3.7	-0.0
phage	Wcs_1	-0.2	-0.5	-0.1	-1.8	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.8	-1.0	-0.9	+0.0	+0.0
phage	JP1 MOI 0.1	-0.1	-0.1	+0.1	-2.1	-0.4
soil	soil sample 5; outgrowth in LB	-0.0	+0.0	-0.3	-2.3	+0.1
carbon source	Uridine (C)	-0.4	-0.2	-0.1	-1.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	-0.2	-1.5	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	-0.2	-1.6	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.2	-0.3	-2.0	+0.1
supernatant control	Vogels_fungal_media; pH 5.5	-0.4	+0.1	-0.2	-1.5	+0.2
phage	P. simiae OR1 MOI 0.1	+0.1	-0.4	+0.1	-1.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.1	-0.2	-1.4	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.2	+0.1	-0.0	-1.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.7	+0.4	-1.7	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.5	-0.1	-0.1	-1.0	+0.3
stress	Paraquat dichloride 0.008 mg/ml	-0.1	+0.2	-0.4	-0.8	+1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	+0.7	+0.1	-1.0	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.3	-0.0	+1.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+1.0	-0.1	-0.6	+0.2
phage	P. simiae Grant Run MOI 0.1	+0.5	-0.5	+0.2	+1.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.1	-0.6	+1.0	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.7	-0.7	-0.1	+1.3	-0.2
stress	Thallium(I) acetate 0.0625 mg/ml	+0.5	+0.0	-1.0	+0.0	+1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.1	-0.3	+1.6	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.3	-0.2	+0.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.3	+0.3	+1.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	-0.2	+1.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.2	+0.8	+0.0	-0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.6	-0.1	+1.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.3	+0.1	+1.6	-0.2