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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2187 and GFF2188 are separated by 160 nucleotides
GFF2188 and GFF2189 are separated by 68 nucleotides
GFF2189 and GFF2190 are separated by 17 nucleotides
GFF2190 and GFF2191 are separated by 104 nucleotides
GFF2187 - ATPase associated with various cellular activities, AAA_5, at 243,631 to 244,485
GFF2187
GFF2188 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 244,646 to 245,338
GFF2188
GFF2189 - Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3), at 245,407 to 246,015
GFF2189
GFF2190 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 246,033 to 246,758
GFF2190
GFF2191 - Pca operon transcriptional activator PcaQ, at 246,863 to 247,864
GFF2191
Group
Condition
GFF2187
GFF2188
GFF2189
GFF2190
GFF2191
complex community
Community=arabino-guar; Passage=4
+0.1
-0.1
-1.3
-0.7
-1.6
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.1
-0.4
-0.3
-2.8
complex community
Community=Locust bean gum; Passage=4
-0.1
+0.2
-3.6
-0.3
+0.5
complex community
Community=Kojac gum; Passage=4
+0.3
+0.2
-2.4
-0.1
-0.2
complex community
Community=guar; Passage=4
+0.2
-0.1
-0.2
-0.4
-1.5
complex community
Community=arabino-guar; Passage=4
-0.4
-0.4
-0.4
-0.2
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
-0.2
-0.1
-0.1
-1.2
complex community
Community=guar; Passage=4
+0.2
-0.0
-1.4
-0.2
-0.2
complex community
Community=guar; Passage=4
+0.0
-0.2
-0.1
-0.4
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
-0.2
-0.5
-0.1
-0.5
complex community
Community=arabino-guar; Passage=4
-0.1
-0.2
-0.2
-0.5
-0.4
complex community
Community=Locust bean gum; Passage=1
+0.0
-0.2
-0.4
+0.2
-0.8
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
-0.1
+0.1
-0.1
-0.9
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
-0.2
-0.7
+0.0
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.0
+0.0
+0.3
-0.0
-1.3
phage
phage_bap4
-0.0
-0.0
-0.2
-0.1
-0.6
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.0
-0.6
-0.5
+0.6
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
-0.1
-0.6
+0.0
+0.1
complex community
Community=arabino-guar; Passage=4
-0.1
+0.1
-1.1
-0.1
+0.5
complex community
Community=guar; Passage=4
+0.2
+0.0
-0.4
-0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.2
-0.4
+0.0
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.2
+0.2
-0.2
-0.3
complex community
Community=Kojac gum; Passage=1
-0.0
-0.2
-0.5
+0.2
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.1
-0.0
-0.6
+0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.0
-0.5
-0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
-0.1
-0.1
-0.0
+0.5
phage
phage_bap4
+0.2
-0.1
-0.5
+0.0
+0.6
phage
phage_bap4
+0.3
-0.1
-0.2
+0.0
+0.5
phage
phage_bap4
+0.2
-0.0
+0.1
-0.1
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.1
+0.6
-0.0
+0.4
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