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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2186 and GFF2187 are separated by 3 nucleotides
GFF2187 and GFF2188 are separated by 573 nucleotides
GFF2188 and GFF2189 are separated by 184 nucleotides
GFF2189 and GFF2190 are separated by 185 nucleotides
GFF2186 - N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18), at 32,563 to 33,690
GFF2186
GFF2187 - FIG138056: a glutathione-dependent thiol reductase, at 33,694 to 34,050
GFF2187
GFF2188 - RND efflux system, inner membrane transporter CmeB, at 34,624 to 37,737
GFF2188
GFF2189 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 37,922 to 39,622
GFF2189
GFF2190 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 39,808 to 41,769
GFF2190
Group
Condition
GFF2186
GFF2187
GFF2188
GFF2189
GFF2190
phage
LB_plus_SM_buffer with S16_phage 15 MOI
N.D.
N.D.
-0.3
-0.2
+0.0
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
N.D.
N.D.
-0.6
+0.1
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
N.D.
N.D.
-0.3
+0.0
-0.0
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
N.D.
N.D.
+0.1
-0.1
-0.2
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
N.D.
N.D.
-0.3
+0.0
+0.1
phage
LB_plus_SM_buffer with EIP16_phage 0.875 MOI
N.D.
N.D.
-0.1
-0.3
+0.2
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
N.D.
N.D.
+0.1
-0.2
-0.1
phage
Ffm_phage 10 MOI; agar plate assay
N.D.
N.D.
-0.1
-0.1
+0.2
phage
Br60_phage 15 MOI
N.D.
N.D.
-0.1
-0.2
+0.2
micoeukaryotes
Acanthamoeba sp., muxed culture-1
N.D.
N.D.
+0.1
-0.0
-0.2
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
N.D.
N.D.
-0.2
+0.2
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
N.D.
N.D.
-0.1
+0.3
-0.2
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
N.D.
N.D.
-0.1
+0.2
-0.1
micoeukaryotes
Dictyostellum sp.mixed culture-1
N.D.
N.D.
+0.2
-0.1
-0.2
phage
LB_plus_SM_buffer with P22_phage 15 MOI
N.D.
N.D.
+0.1
+0.2
-0.2
phage
Br60_phage 15 MOI
N.D.
N.D.
-0.1
-0.1
+0.3
phage
LB_plus_SM_buffer with S16_phage 15 MOI
N.D.
N.D.
-0.2
+0.1
+0.2
phage
6H2_phage 10 MOI; agar plate assay
N.D.
N.D.
+0.0
-0.1
+0.3
phage
LB_plus_SM_buffer with Ffm_phage 0.0001875 MOI
N.D.
N.D.
-0.0
-0.1
+0.2
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
N.D.
N.D.
+0.1
-0.1
+0.2
phage
LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
N.D.
N.D.
+0.1
+0.0
+0.2
phage
LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI
N.D.
N.D.
+0.1
+0.0
+0.2
phage
6F2_phage 15 MOI
N.D.
N.D.
-0.0
+0.1
+0.3
phage
LB_plus_SM_buffer with 6F2_phage 1.875 MOI
N.D.
N.D.
-0.0
+0.0
+0.4
nophagecontrol
No phage control
N.D.
N.D.
+0.1
+0.3
+0.1
phage
LB_plus_SM_buffer with 6F2_phage 0.01875 MOI
N.D.
N.D.
+0.2
+0.1
+0.2
phage
LB_plus_SM_buffer with 6D2_phage 0.75 MOI
N.D.
N.D.
+0.1
+0.4
+0.2
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
N.D.
N.D.
-0.0
+0.3
+0.4
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
N.D.
N.D.
+0.9
+0.1
-0.2
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
N.D.
N.D.
+0.2
+0.9
+0.0
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