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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2185 and GFF2186 are separated by 34 nucleotides
GFF2186 and GFF2187 are separated by 4 nucleotides
GFF2187 and GFF2188 are separated by 160 nucleotides
GFF2188 and GFF2189 are separated by 68 nucleotides
GFF2185 - Acetyltransferase, GNAT family, at 242,759 to 243,346
GFF2185
GFF2186 - no description, at 243,381 to 243,626
GFF2186
GFF2187 - ATPase associated with various cellular activities, AAA_5, at 243,631 to 244,485
GFF2187
GFF2188 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 244,646 to 245,338
GFF2188
GFF2189 - Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3), at 245,407 to 246,015
GFF2189
Group
Condition
GFF2185
GFF2186
GFF2187
GFF2188
GFF2189
complex community
Community=Locust bean gum; Passage=4
+0.6
-0.6
-0.1
+0.2
-3.6
complex community
Community=arabino-guar; Passage=4
-0.1
-2.1
+0.1
-0.1
-1.3
complex community
Community=guar; Passage=4
-0.0
-2.3
+0.2
+0.0
-0.4
complex community
Community=Kojac gum; Passage=4
-0.5
+0.2
+0.3
+0.2
-2.4
complex community
Community=arabino-guar; Passage=4
+0.3
-0.6
-0.4
-0.4
-0.4
complex community
Community=Locust bean gum; Passage=4
-1.1
+0.3
-0.4
+0.1
-0.0
complex community
Community=Locust bean gum; Passage=1
+0.1
-0.6
+0.0
-0.2
-0.4
phage
phage_bap4
-0.4
-0.3
-0.1
-0.1
-0.2
complex community
Community=guar; Passage=4
-0.3
-0.5
+0.0
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.3
-0.1
-0.2
-0.4
complex community
Community=guar; Passage=4
-0.0
+0.4
+0.2
-0.0
-1.4
phage
phage_bap4
-0.1
-0.3
+0.2
-0.1
-0.5
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.4
-0.2
+0.1
-0.2
-0.7
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.4
-0.1
-0.2
-0.1
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
+0.2
-0.2
-0.1
-0.2
complex community
Community=Kojac gum; Passage=1
-0.1
+0.2
-0.0
-0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.5
-0.2
-0.1
+0.1
phage
phage_bap4
-0.3
+0.3
-0.2
-0.1
-0.2
complex community
Community=arabino-guar; Passage=4
+0.8
-0.1
-0.1
+0.1
-1.1
complex community
Community=guar; Passage=4
-0.7
+0.5
+0.2
-0.1
-0.2
phage
phage_bap4
-0.3
+0.4
+0.0
-0.1
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.5
+1.3
-0.3
+0.0
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.5
-0.0
-0.2
-0.5
no phage control
no phage control
-0.4
+0.7
-0.0
-0.1
-0.1
no phage control
no phage control
-0.3
+0.5
+0.0
-0.0
-0.1
no phage control
no phage control
-0.3
+0.5
+0.1
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.2
-0.1
+0.1
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.5
-0.1
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.4
+0.5
-0.1
+0.0
-0.1
complex community
Community=Locust bean gum; Passage=4
+0.1
+0.9
+0.0
+0.1
-0.4
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