Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_11120 and PS417_11125 are separated by 180 nucleotidesPS417_11125 and PS417_11130 are separated by 256 nucleotidesPS417_11130 and PS417_11135 are separated by 13 nucleotidesPS417_11135 and PS417_11140 overlap by 4 nucleotides PS417_11120: PS417_11120 - UDP pyrophosphate phosphatase, at 2,383,577 to 2,384,446 _11120 PS417_11125: PS417_11125 - hypothetical protein, at 2,384,627 to 2,385,133 _11125 PS417_11130: PS417_11130 - peptide ABC transporter substrate-binding protein, at 2,385,390 to 2,386,946 _11130 PS417_11135: PS417_11135 - peptide ABC transporter, at 2,386,960 to 2,387,901 _11135 PS417_11140: PS417_11140 - peptide ABC transporter permease, at 2,387,898 to 2,388,752 _11140
Group Condition PS417_11120 PS417_11125 PS417_11130 PS417_11135 PS417_11140
phage P. simiae Grant Run MOI 0.1 -0.6 -0.2 -0.0 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.5 -1.0 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 +0.1 -0.4 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.7 -0.5 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 -0.6 +0.5 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.6 +0.4 N.D. -0.6
soil soil sample 4; outgrowth in LB -1.0 +0.3 -0.4 N.D. +0.1
stress R2A with Fusaric 120 ug/mL +0.4 -0.8 -0.2 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.2 +0.9 -0.4 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.2 -0.8 N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 -0.7 +0.2 N.D. -0.4
nophagecontrol Only library +0.5 -1.1 +0.4 N.D. -0.2
phage JP1 MOI 10 +0.3 -0.5 -0.7 N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 -0.3 -0.4 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 -0.6 +0.8 N.D. -0.4
seeds Growth on radish seeds for 24 hours +0.4 -0.9 -0.0 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.3 +0.8 N.D. -0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.4 -0.4 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.7 -0.3 +0.1 N.D. +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -0.4 +0.5 N.D. -0.3
stress methylglyoxal 0.032 vol% -0.3 +0.6 +0.5 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 -0.4 +0.5 N.D. -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.3 +0.9 N.D. -0.2
phage P. simiae OR Antrim MOI 1 +0.9 +0.3 -0.5 N.D. +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.9 +0.0 N.D. -0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 -0.1 +0.5 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.3 +0.2 -0.5 N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +0.7 +0.2 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.0 -0.1 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +0.7 +0.2 N.D. +0.6
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