Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2168 and GFF2169 overlap by 4 nucleotidesGFF2169 and GFF2170 are separated by 20 nucleotidesGFF2170 and GFF2171 are separated by 34 nucleotidesGFF2171 and GFF2172 are separated by 73 nucleotides GFF2168 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 221,912 to 222,835 GFF2168 GFF2169 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 222,832 to 224,622 GFF2169 GFF2170 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 224,643 to 225,353 GFF2170 GFF2171 - MBL-fold metallohydrolase SPO0683, at 225,388 to 226,356 GFF2171 GFF2172 - Permease of the drug/metabolite transporter (DMT) superfamily, at 226,430 to 227,302 GFF2172
Group Condition GFF2168 GFF2169 GFF2170 GFF2171 GFF2172
complex community Community=Locust bean gum; Passage=4 -0.4 -0.3 -1.8 -1.1 -0.0
complex community Community=Kojac gum; Passage=4 -1.3 -0.1 -1.1 +0.5 -0.4
complex community Community=guar; Passage=4 -1.5 -0.1 -0.3 -0.1 +0.4
phage phage_bap4 -0.5 -0.2 -0.1 -0.4 -0.2
phage phage_bap4 -0.4 -0.1 -0.3 -0.0 -0.2
complex community Community=arabino-guar; Passage=4 -0.7 +0.2 +0.2 -0.4 -0.4
phage phage_bap4 +0.2 -0.0 -0.9 -0.1 -0.1
complex community Community=Locust bean gum; Passage=4 -0.9 +0.5 -0.1 -0.4 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 +0.0 -0.7 +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 -0.2 +0.3 +0.1 -0.3
phage phage_bap4 +0.3 -0.1 -0.2 -0.3 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.5 -0.1 -0.3 +0.1 -0.3
complex community Community=arabino-guar; Passage=4 -0.9 +0.1 +1.1 +0.0 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.5 -0.3 -0.1 +0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.5 +0.1 +0.3 +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.6 -0.3 -0.0 +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.0 +0.5 +0.3 -0.2
no phage control no phage control +0.6 +0.1 +0.2 -0.1 -0.1
complex community Community=Locust bean gum; Passage=4 +1.3 +0.2 -1.1 +0.7 -0.3
vitamin M9 with Supernatant from Cyptococcus +0.5 +0.1 +0.3 +0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 -0.1 +0.7 +0.3 -0.1
complex community Community=arabino-guar; Passage=4 +0.1 +0.3 +0.5 -0.4 +0.4
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.3 -0.0 +0.3 +0.4 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.8 -0.1 +0.2 +0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 -0.1 +0.8 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 -0.0 +0.6 +0.5 -0.0
complex community Community=guar; Passage=4 -0.7 +0.4 +1.2 -0.2 +0.5
complex community Community=Locust bean gum; Passage=4 +1.4 -0.3 +0.1 -0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.7 +0.1 +0.2 +0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.5 +0.3 +0.6 +0.1 +0.1
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