Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11055	PS417_11060	PS417_11065	PS417_11070	PS417_11075
phage	Wcs_1	-0.3	-1.6	+0.2	-0.7	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-1.2	-0.4	-0.7	-0.2
seeds	Growth on radish seeds for 72 hours	+0.6	-3.1	-1.0	-0.4	+0.6
root	root sample 6; outgrowth in LB	-1.1	-0.2	-0.7	+0.2	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-1.0	-0.3	+0.0	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.5	-0.2	-0.5	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	-0.8	-0.1	+0.3	-1.2
stress	R2A with Fusaric 120 ug/mL	+0.5	-0.9	-0.0	-0.3	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-1.4	+0.1	-0.5	-0.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.2	-0.2	+0.2	+0.3	-2.0
seeds	Growth on radish seeds for 24 hours	-0.5	+0.2	+0.1	-1.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.0	-0.3	-0.7	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.5	-0.2	-1.3	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.4	-0.3	-0.7	-0.6
stress	methylglyoxal 0.032 vol%	-0.3	+0.5	+0.5	-1.1	-0.9
phage	JP1 MOI 1	+0.1	-1.9	-0.1	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.7	-0.2	+0.0	-1.0
agar plate interaction control	Taped volatile agar plate with no fungus	-1.8	-0.0	-0.3	+0.2	+1.0
soil	soil sample 8; outgrowth in LB	+0.6	+0.8	-0.4	-1.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	-0.4	+0.1	+0.2	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.7	-0.2	-0.3	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.0	-1.2	-0.2	+0.6	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.3	+0.3	+0.3	+0.5	+0.7
carbon source	L-Valine (C)	-0.2	+0.8	+0.2	-1.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.2	-0.3	-0.9	+0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.4	-0.7	+0.8	+1.0	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+1.3	-0.1	+0.5	-0.7
seeds	Growth on radish seeds for 72 hours	+0.2	-0.5	-0.8	+0.6	+1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.6	-0.4	-0.4	-0.3	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.1	-0.1	+2.3	+0.3