Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_11020	PS417_11025	PS417_11030	PS417_11035	PS417_11040
carbon source	L-Arabinose (C)	-2.2	-1.3	-1.8	N.D.	-0.1
carbon source	L-Arabinose (C)	-1.8	-1.2	-1.9	N.D.	-0.2
seeds	Growth on radish seeds for 72 hours	-1.1	-0.3	-0.5	N.D.	-0.3
phage	P. simiae Grant Run MOI 0.1	-0.4	-0.8	-0.2	N.D.	-0.1
phage	JP1 MOI 1	-0.7	-0.2	-0.1	N.D.	-0.5
phage	JP1 MOI 10	-0.2	-0.4	-0.3	N.D.	-0.4
carbon source	D-Glucosamine Hydrochloride (C)	-0.7	+0.4	-0.2	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.1	-0.5	N.D.	-0.6
phage	JP1 MOI 1	-0.6	-0.4	+0.1	N.D.	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.7	-0.7	-0.1	N.D.	+0.2
seeds	Growth on radish seeds for 72 hours	-0.4	-0.6	+0.1	N.D.	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	+0.2	+0.1	N.D.	-0.5
carbon source	D-Xylose (C)	+0.3	-0.3	+0.1	N.D.	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.9	+0.3	+0.1	N.D.	-0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.6	-0.6	+0.0	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-0.2	+0.2	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.7	+0.1	N.D.	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.6	-0.3	+0.1	N.D.	+0.4
seeds	Growth on radish seeds for 72 hours	-0.4	-0.5	+0.1	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	-0.3	+0.2	N.D.	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.9	-0.1	N.D.	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3	-0.3	-0.2	N.D.	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.6	+0.2	N.D.	-0.3
phage	JP1 MOI 10	+0.7	-0.1	-0.5	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.6	+0.5	N.D.	+0.5
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.8	-0.1	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.4	+0.2	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.3	-0.5	+0.0	N.D.	+0.1
carbon source	D-Glucose-6-Phosphate (C)	+0.6	+0.4	+0.1	N.D.	+0.4
carbon source	D-Glucose-6-Phosphate (C)	+0.5	+0.5	+0.2	N.D.	+0.9