Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01085	PS417_01090	PS417_01095	PS417_01100	PS417_01105
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.0	-3.3	-0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.4	-0.0	-3.5	-0.4	-0.0
solid stress	Fraxetin 2 mM; solid stress	+0.2	-0.2	-2.7	-0.1	-0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.1	-0.0	-2.8	-0.3	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.0	-2.8	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.3	-2.3	-0.4	+0.1
liquid stress	Fraxetin 3 mM; liquid stress	+0.1	+0.2	-3.0	-0.1	-0.0
phage	P. simiae Grant Run MOI 10	-0.2	+0.1	-2.5	-0.1	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.3	-1.7	-0.6	-0.6
soil	soil sample 3; outgrowth in LB	+0.2	-0.3	-1.7	-0.6	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.4	-2.1	-0.2	-0.4
soil	soil sample 8; outgrowth in LB	-0.2	+0.1	-2.6	-0.1	+0.4
carbon source	2'-Deoxyinosine 5 mM (C)	-0.0	+0.4	-2.7	+0.7	-0.7
supernatant control	Vogels_fungal_media 0.1X	+0.3	-0.0	-2.6	-0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.1	-2.3	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.1	-2.2	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.2	-2.8	+0.6	+0.6
phage	JP1 MOI 1	+0.3	+0.2	-2.1	-0.2	+0.1
carbon source	L-Valine (C)	+0.3	+0.7	-2.5	+0.0	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	-0.5	+0.7	-0.8	-1.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	+0.1	-1.5	+0.5	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	+0.8	-1.7	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.5	-1.5	-0.1	+0.3
phage	P. simiae OR1 MOI 0.1	+0.5	+0.4	-1.8	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.3	-1.1	+0.2	+1.0
phage	P. simiae Grant Run MOI 0.1	-0.1	+0.6	-1.0	+0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.6	-1.4	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.2	+1.8	-0.1	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.2	-1.0	+1.2	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.1	+1.3	-0.7	+0.3