Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11005	PS417_11010	PS417_11015	PS417_11020	PS417_11025
carbon source	L-Arabinose (C)	-2.6	-4.6	-3.9	-2.2	-1.3
carbon source	L-Arabinose (C)	-2.8	-4.3	-4.1	-1.8	-1.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.3	-0.2	-1.3	-0.6	-0.3
phage	Wcs_1	-0.2	-0.4	-1.3	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-0.6	-0.3	-0.7	-0.2
soil	soil sample 5; outgrowth in LB	+0.2	-1.2	-0.4	-0.3	-0.5
supernatant control	Vogels_fungal_media 0.1X	-0.4	-0.6	-0.7	+0.1	-0.6
phage	P. simiae ORA MOI 1	-0.1	-0.4	-0.4	-0.9	-0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.2	-0.2	-0.5	-0.6	-0.6
ecofab	LB 0.5x in EcoFAB_3.5mL	-0.0	-0.2	-0.6	-0.8	-0.2
soil	soil sample 3; outgrowth in LB	+0.2	-0.8	-0.6	-0.5	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.1	-1.0	-0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	-0.4	-0.6	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	-0.1	+0.4	-0.9	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	-0.3	-0.5	-0.8	+0.4
phage	JP1 MOI 10	+0.0	+0.0	-1.2	+0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.2	+0.4	+0.2	-0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.6	+0.3	-0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.2	-0.7	+1.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.2	+0.4	+0.4	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.7	+1.1	+0.1	-0.1
phage	P. simiae ORA MOI 10	-0.2	+0.1	+0.6	+0.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.5	-0.7	+0.6	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.4	+0.7	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.8	-0.6	+0.5	+0.4
carbon source	D-Xylose (C)	+0.6	+0.4	+0.5	+0.3	-0.3
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.2	+0.6	+0.2	+0.8
phage	P. simiae OR Antrim MOI 1	+0.0	+0.6	+0.9	+0.4	-0.1
carbon source	D-Glucose-6-Phosphate (C)	+0.4	+0.2	+0.3	+0.5	+0.5
carbon source	D-Xylose (C)	+0.5	+0.4	+0.8	+0.1	+0.1