Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10980	PS417_10985	PS417_10990	PS417_10995	PS417_11000
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-5.2	-0.2	-2.5	+0.8
carbon source	L-Valine (C)	N.D.	-4.2	-0.2	-1.7	-0.2
carbon source	L-Arabinose (C)	N.D.	-0.5	+0.1	+1.9	-5.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-3.0	+0.2	-0.8	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-2.1	-0.3	-0.6	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-2.4	-0.1	-0.5	+0.2
phage	JP1 MOI 0.1	N.D.	-1.1	+0.2	-1.7	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-3.2	-0.0	+0.9	-0.2
phage	JP1 MOI 1	N.D.	-1.0	+0.3	-0.6	-1.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	N.D.	-1.0	+0.1	-1.7	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-2.2	-0.2	+0.4	-0.2
phage	JP1 MOI 1	N.D.	-1.1	+0.3	-1.5	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-1.5	-0.2	+1.3	-1.8
solid stress	80% Methanol 2 mM; solid stress	N.D.	-1.6	+0.1	-0.9	+0.5
carbon source	Gly-Glu (C)	N.D.	-0.0	+0.0	-2.4	+0.5
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.2	-0.0	-2.5	+0.4
soil	soil sample 7; outgrowth in LB	N.D.	-2.1	-0.3	+1.0	-0.4
carbon source	L-Arabinose (C)	N.D.	+0.3	+0.0	+2.0	-4.0
root	root sample 6; outgrowth in LB	N.D.	-2.1	+0.1	+1.6	-1.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.6	+0.2	-0.7	+0.5
soil	soil sample 4; outgrowth in LB	N.D.	-1.4	+0.0	+1.2	-1.3
phage	P. simiae OR Antrim MOI 10	N.D.	-2.3	+0.1	+0.2	+0.6
soil	soil sample 6; outgrowth in LB	N.D.	-2.0	-0.1	+1.5	+0.0
soil	soil sample 8; outgrowth in LB	N.D.	-2.0	-0.0	+2.0	-0.4
soil	soil sample 3; outgrowth in LB	N.D.	-0.4	-0.0	+1.7	-1.1
soil	soil sample 2; outgrowth in LB	N.D.	-1.1	+0.1	+1.8	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-1.3	-0.0	+1.6	+0.2
carbon source	D-Xylose (C)	N.D.	-0.1	+0.0	+2.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	-0.1	+0.7	+1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+4.4	+0.2	-0.3	+0.1