Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10955 and PS417_10960 are separated by 57 nucleotidesPS417_10960 and PS417_10965 are separated by 210 nucleotidesPS417_10965 and PS417_10970 are separated by 145 nucleotidesPS417_10970 and PS417_10980 are separated by 423 nucleotides PS417_10955: PS417_10955 - porin, at 2,344,237 to 2,345,502 _10955 PS417_10960: PS417_10960 - quinate dehydrogenase, at 2,345,560 to 2,347,968 _10960 PS417_10965: PS417_10965 - chemotaxis protein, at 2,348,179 to 2,350,122 _10965 PS417_10970: PS417_10970 - effector protein, at 2,350,268 to 2,351,158 _10970 PS417_10980: PS417_10980 - ArsR family transcriptional regulator, at 2,351,582 to 2,351,881 _10980
Group Condition PS417_10955 PS417_10960 PS417_10965 PS417_10970 PS417_10980
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 -0.0 -4.9 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.5 -3.5 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.4 -1.1 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.2 -0.2 -0.3 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.0 -1.3 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -0.3 -0.3 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -0.3 +0.1 -0.3 N.D.
motility inner cut, LB soft agar motility assay -0.5 -0.4 -0.1 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.2 -0.2 -0.0 +0.2 N.D.
stress 1-ethyl-3-methylimidazolium chloride 200 mM -1.1 -0.3 +0.1 +0.2 N.D.
stress Doxycycline hyclate 0.001 mg/ml -1.3 +0.1 +0.2 +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.0 -0.1 -0.1 +0.4 N.D.
stress methylglyoxal 0.032 vol% -1.0 -0.1 +0.3 +0.2 N.D.
phage Wcs_0.1 -0.9 +0.3 +0.1 -0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 +0.2 +0.3 +0.2 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.7 -0.3 -0.1 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 +0.4 +0.6 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 +0.6 +0.4 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 -0.2 -0.0 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.8 -0.1 -0.2 +0.2 N.D.
phage P. simiae ORA MOI 1 +0.7 +0.0 -0.3 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.5 +0.2 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 +0.2 -0.3 +0.5 N.D.
phage P. simiae OR Antrim MOI 0.1 +0.6 +0.2 -0.0 +0.4 N.D.
soil soil sample 2; outgrowth in LB +0.7 +0.5 +0.1 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 -0.1 +0.6 +0.3 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.7 +0.3 +0.2 +0.1 N.D.
soil soil sample 6; outgrowth in LB +0.6 +0.4 +0.2 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.0 +0.2 -0.0 +0.3 N.D.
soil soil sample 4; outgrowth in LB +1.1 +0.5 +0.7 -0.1 N.D.
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