Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10930	PS417_10935	PS417_10940	PS417_10945	PS417_10950
carbon source	D-Xylose (C)	-0.4	-0.3	-0.1	-3.2	-2.9
carbon source	D-Xylose (C)	-0.2	-0.6	+0.2	-2.9	-3.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.3	-0.1	-0.7	-0.1
solid stress	Fraxetin 3 mM; solid stress	-0.4	-1.2	+0.3	-0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.7	-0.8	-0.6	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	-0.9	-0.0	-0.2	+0.1
no phage control	Time6-nophage	-0.0	-0.8	+0.2	-0.2	-0.3
stress	1-ethyl-3-methylimidazolium chloride 200 mM	-0.2	-0.5	-0.3	+0.1	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	-0.8	-0.5	-0.1	+0.6
phage	P. simiae OR Antrim MOI 10	-0.3	-0.3	-0.5	+0.2	-0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	-0.4	+0.4	-0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.3	-0.3	+0.2	+0.3
soil	soil sample 3; outgrowth in LB	-0.6	-0.2	+0.5	-0.1	-0.2
soil	soil sample 4; outgrowth in LB	-0.5	+0.4	-0.2	+0.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.0	-0.7	+0.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.7	-0.5	-0.5	+0.0
carbon source	L-Valine (C)	+0.1	-0.8	+0.3	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.6	+0.4	-0.0	-0.2
phage	P. simiae ORA MOI 10	-0.3	+0.3	-0.4	+0.5	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	-0.3	+0.2	-0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.4	+0.2	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-0.5	+0.6	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.3	+0.3	+0.1	-0.2
phage	P. simiae Grant Run MOI 0.1	-0.5	+0.4	+0.7	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.2	-0.1	+0.8	+0.2
stress	Gentamicin 0.008 mg/ml	+0.9	+0.5	-0.4	+0.3	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.1	-0.1	+0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.4	+0.2	-0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.4	+0.5	+0.1	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	+0.4	+0.2	+0.0	+0.2