Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10895	PS417_10900	PS417_10905	PS417_10910	PS417_10915
carbon source	L-Valine (C)	-0.6	-0.6	-0.3	-0.1	-0.3
seeds	Growth on radish seeds for 72 hours	-0.2	+0.2	-0.1	-1.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	-0.6	-0.4	-0.2
soil	soil sample 3; outgrowth in LB	+0.0	-0.0	-0.7	-1.1	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.2	-0.1	-1.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	+0.2	-0.0	-1.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.6	-0.1	-0.7	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.1	+0.2	-1.2	-0.2
phage	P. simiae OR Antrim MOI 1	-0.4	+0.3	+0.1	-0.6	+0.2
carbon source	L-Valine (C)	+0.3	+0.7	-0.6	-0.5	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.5	+0.4	-0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.6	-0.3	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.4	+0.5	+0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	-0.4	+0.5	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.6	-0.1	+0.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	-0.2	+1.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.1	+0.0	+1.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.2	+0.4	-0.2	+0.7
soil	soil sample 4; outgrowth in LB	+0.2	-0.2	+0.6	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.7	+0.5	+0.3	-0.2
phage	P. simiae ORA MOI 0.1	-0.2	+0.5	+0.2	+0.7	+0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	+0.2	+0.2	+0.2	+1.0	-0.1
phage	P. simiae ORA MOI 0.1	+0.3	+0.3	+0.2	+0.8	+0.1
root	root sample 6; outgrowth in LB	+1.4	+0.3	-0.1	+0.1	+0.3
carbon source	2-Deoxy-D-Ribose (C)	+0.6	+0.4	+0.4	+0.4	+0.3
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.6	+0.5	+0.5	+0.6	+0.0
carbon source	2-Deoxy-D-Ribose (C)	+0.5	+0.6	+0.4	+0.6	+0.4
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.6	+0.5	+0.6	+0.6	+0.3
carbon source	2-Deoxy-D-Ribose (C)	+0.4	+0.7	+0.3	+0.9	+0.3
carbon source	2-Deoxy-D-Ribose (C)	+0.3	+0.8	+0.5	+0.9	+0.2