Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_10885	PS417_10890	PS417_10895	PS417_10900	PS417_10905
carbon source	2-Deoxy-D-Ribose (C)	-4.7	-4.3	+0.3	+0.8	+0.5
carbon source	2-Deoxy-D-Ribose (C)	-3.9	-4.8	+0.4	+0.7	+0.3
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-3.9	-2.9	+0.6	+0.5	+0.5
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-3.0	-3.3	+0.6	+0.5	+0.6
carbon source	2-Deoxy-D-Ribose (C)	-2.2	-2.4	+0.5	+0.6	+0.4
carbon source	2-Deoxy-D-Ribose (C)	-2.3	-1.9	+0.6	+0.4	+0.4
stress	2-Furfuraldehyde 0.06 vol%	-0.8	-1.0	-0.2	+0.2	+0.1
stress	2-Furfuraldehyde 0.03 vol%	-1.0	-0.8	-0.2	+0.1	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.6	-0.5	-0.2	-0.2	-0.0
seeds	Growth on radish seeds for 72 hours	-0.4	-0.2	-0.6	+0.2	-0.4
carbon source	L-Valine (C)	-0.1	+0.4	-0.6	-0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.1	-0.2	-0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.2	+0.1	-0.7	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.7	+0.4	-0.5	+0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.4	-0.1	+0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.2	+0.1	+0.6	-0.1
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.2	+0.6	-0.3	-0.0	-0.2
carbon source	L-Valine (C)	+0.3	-0.4	+0.3	+0.7	-0.6
seeds	Growth on radish seeds for 72 hours	+0.6	+0.4	-0.4	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.4	-0.4	+0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.3	-0.2	+0.6	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.3	-0.1	+0.5	+0.4
soil	soil sample 7; outgrowth in LB	+0.3	+0.6	+0.3	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.1	+0.9	+0.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.7	+0.3	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.4	+0.4	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.2	+0.1	+0.7	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.5	+0.6	-0.1	-0.0
soil	soil sample 6; outgrowth in LB	+0.2	+0.5	+0.5	+0.2	-0.1
root	root sample 6; outgrowth in LB	+0.4	+0.1	+1.4	+0.3	-0.1