Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10870	PS417_10875	PS417_10880	PS417_10885	PS417_10890
carbon source	2-Deoxy-D-Ribose (C)	-0.3	+0.1	-1.4	-3.9	-4.8
carbon source	2-Deoxy-D-Ribose (C)	+0.4	+0.1	-1.4	-4.7	-4.3
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.1	+0.1	-1.6	-3.9	-2.9
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.8	+0.1	-1.9	-3.0	-3.3
carbon source	2-Deoxy-D-Ribose (C)	-0.0	+0.3	-0.8	-2.2	-2.4
carbon source	2-Deoxy-D-Ribose (C)	-0.1	+0.1	-0.9	-2.3	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	-0.2	-0.5	+0.1	+0.1
stress	2-Furfuraldehyde 0.03 vol%	+0.4	+0.1	-0.9	-1.0	-0.8
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	-0.3	-0.9	-0.5	-0.1
stress	2-Furfuraldehyde 0.06 vol%	+0.4	+0.0	-0.6	-0.8	-1.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.0	+0.1	-0.6	-0.3	-0.1
phage	P. simiae OR1 MOI 0.1	-1.7	-0.1	-0.0	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.1	+0.1	-0.1	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	-1.1	-0.5	+0.3	-0.7	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	-0.2	-0.4	-0.4	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.8	-0.2	-0.6	-0.0	+0.2
seeds	Growth on radish seeds for 72 hours	-1.1	+0.1	+0.1	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.0	-0.3	+0.2	-0.1	+0.1
soil	soil sample 6; outgrowth in LB	-0.9	-0.1	-0.6	+0.2	+0.5
phage	P. simiae OR Antrim MOI 10	-0.6	-0.2	+0.7	+0.0	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.3	-0.6	+0.5	-0.4
seeds	Growth on radish seeds for 72 hours	-0.1	+1.3	-0.7	-0.4	-0.5
motility	inner cut, LB soft agar motility assay	+0.6	+0.1	-0.4	+0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+0.5	-0.2	-0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	+0.3	+0.5	-0.3	-0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.6	-0.4	+0.2	+0.3	+0.5
phage	P. simiae ORA MOI 0.1	+0.9	-0.2	+0.6	+0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	+0.4	-0.1	+0.1	+0.2
seeds	Growth on radish seeds for 72 hours	-0.4	+0.6	+0.6	+0.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.1	+0.4	+0.2	+0.4	+0.1