Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2123 and GFF2124 are separated by 36 nucleotidesGFF2124 and GFF2125 are separated by 128 nucleotidesGFF2125 and GFF2126 are separated by 321 nucleotidesGFF2126 and GFF2127 overlap by 4 nucleotides GFF2123 - Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II, at 173,742 to 174,218 GFF2123 GFF2124 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, thiol-disulfide reductase involved in Cu(I) insertion into CoxII Cu(A) center, at 174,255 to 174,872 GFF2124 GFF2125 - hypothetical protein, at 175,001 to 175,351 GFF2125 GFF2126 - hypothetical protein, at 175,673 to 176,338 GFF2126 GFF2127 - Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly, at 176,335 to 177,612 GFF2127
Group Condition GFF2123 GFF2124 GFF2125 GFF2126 GFF2127
complex community Community=guar; Passage=4 -4.5 +0.6 -0.7 N.D. -1.1
complex community Community=Locust bean gum; Passage=4 -2.5 -0.2 -0.0 N.D. -0.5
complex community Community=Locust bean gum; Passage=4 -1.1 -0.6 -0.9 N.D. -0.4
complex community Community=arabino-guar; Passage=4 -4.3 +0.2 +0.5 N.D. +0.6
complex community Community=guar; Passage=4 -2.7 -0.0 +0.6 N.D. -0.3
complex community Community=arabino-guar; Passage=4 -1.3 +0.4 -1.0 N.D. -0.2
phage phage_bap4 -1.0 +0.1 -0.9 N.D. +0.1
phage phage_bap4 -0.6 +0.1 -0.8 N.D. -0.2
vitamin M9 with Supernatant from Cyptococcus -1.3 +0.1 +0.0 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 -0.1 -1.4 N.D. -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.8 +0.2 -0.4 N.D. -0.5
vitamin M9 with Supernatant from Cyptococcus -1.3 +0.0 -0.2 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -1.2 -0.3 +0.1 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -1.3 +0.2 +0.1 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.8 -0.0 +0.2 N.D. -0.5
complex community Community=guar; Passage=4 -0.6 +0.1 -0.4 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -1.1 +0.0 +0.4 N.D. +0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.4 +0.2 -1.0 N.D. -0.1
phage phage_bap4 +0.3 +0.1 -0.5 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.5 +0.1 -0.8 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.6 +0.1 -0.7 N.D. +0.0
complex community Community=arabino-guar; Passage=4 -1.2 +0.2 +1.0 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 -0.0 +0.2 N.D. -0.5
complex community Community=arabino-guar; Passage=4 +1.0 -0.7 -0.6 N.D. +0.5
phage phage_bap4 +0.6 +0.1 -0.5 N.D. +0.0
phage phage_bap4 +0.7 -0.0 -0.2 N.D. -0.2
complex community Community=Locust bean gum; Passage=4 +1.9 -0.1 -0.3 N.D. -1.2
complex community Community=Locust bean gum; Passage=4 +1.3 +0.3 -0.7 N.D. -0.4
complex community Community=Kojac gum; Passage=4 +1.4 -0.2 +0.3 N.D. +0.1
complex community Community=guar; Passage=4 +0.9 +0.1 +0.4 N.D. +0.3
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