Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10825 and PS417_10830 are separated by 6 nucleotidesPS417_10830 and PS417_10835 are separated by 136 nucleotidesPS417_10835 and PS417_10840 are separated by 19 nucleotidesPS417_10840 and PS417_10845 overlap by 12 nucleotides PS417_10825: PS417_10825 - glycine/betaine ABC transporter substrate-binding protein, at 2,314,492 to 2,315,391 _10825 PS417_10830: PS417_10830 - LysR family transcriptional regulator, at 2,315,398 to 2,316,315 _10830 PS417_10835: PS417_10835 - major facilitator transporter, at 2,316,452 to 2,317,768 _10835 PS417_10840: PS417_10840 - amidase, at 2,317,788 to 2,318,561 _10840 PS417_10845: PS417_10845 - hypothetical protein, at 2,318,550 to 2,318,858 _10845
Group Condition PS417_10825 PS417_10830 PS417_10835 PS417_10840 PS417_10845
stress Phosphomycin 0.001 mg/ml -0.7 N.D. -0.1 -0.5 N.D.
phage JP1 MOI 0.1 -0.5 N.D. -0.4 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 N.D. -0.5 -1.4 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x -0.2 N.D. -0.3 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 N.D. +0.1 -0.8 N.D.
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.2 N.D. -0.4 -0.8 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.1 N.D. -0.0 -1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 N.D. +0.1 -1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. -0.2 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 N.D. -0.2 -0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 N.D. +0.0 -1.1 N.D.
solid stress Fraxetin 1 mM; solid stress +0.3 N.D. +0.1 -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 N.D. -0.2 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. +0.2 -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 N.D. +0.2 +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 N.D. +0.2 -0.5 N.D.
soil soil sample 4; outgrowth in LB -0.1 N.D. -0.4 +1.0 N.D.
phage Wcs_1 +0.0 N.D. -0.3 +0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.9 N.D. +0.2 -0.2 N.D.
carbon source L-Valine (C) +0.8 N.D. -0.1 +0.3 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. +0.4 +0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.7 N.D. -0.1 +0.5 N.D.
phage P. simiae Grant Run MOI 0.1 +0.1 N.D. -0.4 +1.4 N.D.
carbon source octanoate (C) +0.2 N.D. +0.0 +0.9 N.D.
supernatant control Vogels_fungal_media 0.1X +0.9 N.D. -0.0 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. +0.3 +0.3 N.D.
seeds Growth on radish seeds for 72 hours -0.2 N.D. +0.3 +1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. +0.2 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 N.D. +0.2 +0.6 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.5 N.D. +0.1 +0.8 N.D.
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