Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01065	PS417_01070	PS417_01075	PS417_01080	PS417_01085
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.4	-0.2	-1.5	-0.1
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.0	-0.3	-1.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-0.9	+0.3	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.0	-0.3	-1.0	-0.0
soil	soil sample 5; outgrowth in LB	N.D.	-0.0	-0.7	+0.1	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	-0.2	-0.6	-0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	+0.3	-0.7	-0.6	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	-0.4	-0.4	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.1	-0.6	-0.4
soil	soil sample 4; outgrowth in LB	N.D.	+0.1	-0.9	+0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.2	-0.8	+0.3	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.1	+0.3	-0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.2	-0.4	-0.6	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-0.2	+0.4	-0.3
soil	soil sample 6; outgrowth in LB	N.D.	-0.2	-0.6	+0.7	+0.0
carbon source	octanoate (C)	N.D.	-0.1	-0.4	+0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.6	-0.3	-0.4	+0.1
carbon source	L-Valine (C)	N.D.	-0.2	-0.4	+0.5	+0.3
carbon source	Carbon source L-Citrulline 5 mM	N.D.	+0.3	+0.4	-0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	-0.2	+0.9	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.3	+0.9	-0.2
phage	P. simiae OR1 MOI 0.1	N.D.	-0.3	-0.2	+0.4	+0.5
root	root sample 6; outgrowth in LB	N.D.	-0.1	-0.3	+0.5	+0.5
soil	soil sample 3; outgrowth in LB	N.D.	+0.3	-0.5	+0.7	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	-0.3	+0.7	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-0.2	+0.4	+0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.5	+0.1	+0.8	-0.2
carbon source	L-Valine (C)	N.D.	+0.2	-0.1	+1.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	-0.5	+1.6	+0.1
phage	JP1 MOI 10	N.D.	-0.0	+0.2	+0.7	+0.5