Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2112 and GFF2113 are separated by 37 nucleotidesGFF2113 and GFF2114 are separated by 121 nucleotidesGFF2114 and GFF2115 are separated by 145 nucleotidesGFF2115 and GFF2116 are separated by 244 nucleotides GFF2112 - no description, at 161,287 to 162,063 GFF2112 GFF2113 - NADH dehydrogenase (EC 1.6.99.3), at 162,101 to 162,772 GFF2113 GFF2114 - 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type, at 162,894 to 164,534 GFF2114 GFF2115 - transcriptional regulator, AraC family, at 164,680 to 165,492 GFF2115 GFF2116 - Cytochrome P450, at 165,737 to 167,131 GFF2116
Group Condition GFF2112 GFF2113 GFF2114 GFF2115 GFF2116
complex community Community=arabino-guar; Passage=4 -4.1 -1.0 +0.4 N.D. -0.3
complex community Community=Locust bean gum; Passage=4 -3.0 +0.3 -0.6 N.D. -0.1
complex community Community=guar; Passage=4 +0.3 -0.9 -0.7 N.D. -0.4
complex community Community=arabino-guar; Passage=4 -1.6 +0.2 +0.8 N.D. -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.8 +0.1 -0.4 N.D. +0.1
no phage control no phage control -1.0 +0.0 +0.1 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.5 +0.1 -0.2 N.D. -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.7 +0.2 -0.2 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.5 +0.1 -0.1 N.D. +0.0
complex community Community=arabino-guar; Passage=4 -0.3 +0.2 -0.1 N.D. -0.1
complex community Community=guar; Passage=4 -0.4 -0.3 +0.3 N.D. -0.0
complex community Community=arabino-guar; Passage=4 -0.0 -0.4 +0.5 N.D. -0.3
complex community Community=guar; Passage=4 -0.1 -0.3 +0.3 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 -0.1 +0.3 N.D. +0.0
phage phage_bap4 -0.3 -0.1 +0.3 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.1 -0.3 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 +0.3 +0.1 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.8 +0.1 -0.3 N.D. -0.1
phage phage_bap4 -0.3 +0.2 +0.3 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 +0.3 -0.2 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.6 +0.3 -0.1 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.7 -0.2 +0.1 N.D. +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.6 +0.1 +0.1 N.D. -0.1
complex community Community=Locust bean gum; Passage=1 +0.5 +0.2 +0.4 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.6 +0.3 -0.0 N.D. -0.0
complex community Community=guar; Passage=4 +0.4 -0.1 +0.8 N.D. -0.2
complex community Community=Kojac gum; Passage=4 +0.3 +0.5 +0.6 N.D. -0.2
complex community Community=Locust bean gum; Passage=4 +0.7 +0.4 +0.4 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +1.2 -0.0 -0.0 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.9 +0.3 +0.3 N.D. +0.0
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