Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10755	PS417_10760	PS417_10765	PS417_10770	PS417_10775
stress	Gentamicin 0.008 mg/ml	N.D.	N.D.	-1.3	-0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.4	-0.1	-0.3
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	N.D.	N.D.	-0.4	-0.0	-0.3
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	N.D.	N.D.	-0.5	+0.0	-0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	N.D.	-0.9	-0.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.0	+0.1	-0.7
soil	soil sample 7; outgrowth in LB	N.D.	N.D.	-0.7	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.4	-0.3	+0.2
root	root sample 6; outgrowth in LB	N.D.	N.D.	-0.9	+0.0	+0.4
phage	JP1 MOI 10	N.D.	N.D.	-0.5	-0.2	+0.3
stress	methylglyoxal 0.032 vol%	N.D.	N.D.	-0.6	+0.1	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.5	-0.1	+0.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	N.D.	-0.5	+0.1	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	N.D.	-0.4	-0.1	+0.4
carbon source	L-Valine (C)	N.D.	N.D.	-0.5	+0.2	+0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	N.D.	N.D.	-0.4	+0.1	+0.3
phage	P. simiae OR Antrim MOI 1	N.D.	N.D.	-0.5	+0.1	+0.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	N.D.	-0.4	-0.0	+0.4
phage	JP1 MOI 10	N.D.	N.D.	-0.4	+0.1	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.2	-0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.9	-0.1	-0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	N.D.	-0.5	+0.2	+0.7
solid stress	80% Methanol 3 mM; solid stress	N.D.	N.D.	+0.6	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.4	-0.1	+0.3
phage	JP1 MOI 0.1	N.D.	N.D.	-0.2	+0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.1	+0.0	+0.8
solid stress	Fraxetin 1 mM; solid stress	N.D.	N.D.	+0.6	-0.0	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	+0.2	+0.2	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.6	-0.0	+0.5
stress	LB_noSalt with Chloride 1100 mM	N.D.	N.D.	+0.4	+0.4	+0.5