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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2107 and GFF2108 overlap by 4 nucleotides
GFF2108 and GFF2109 are separated by 19 nucleotides
GFF2109 and GFF2110 are separated by 56 nucleotides
GFF2110 and GFF2111 are separated by 55 nucleotides
GFF2107 - no description, at 157,759 to 158,112
GFF2107
GFF2108 - hypothetical protein, at 158,109 to 159,125
GFF2108
GFF2109 - FIG00454067: hypothetical protein, at 159,145 to 159,390
GFF2109
GFF2110 - no description, at 159,447 to 160,289
GFF2110
GFF2111 - Permease of the drug/metabolite transporter (DMT) superfamily, at 160,345 to 161,250
GFF2111
Group
Condition
GFF2107
GFF2108
GFF2109
GFF2110
GFF2111
complex community
Community=arabino-guar; Passage=4
-1.7
-2.1
+0.3
-0.4
-3.8
complex community
Community=Locust bean gum; Passage=4
-4.8
-0.6
+0.5
+0.5
-0.8
complex community
Community=guar; Passage=4
-1.8
+0.2
-1.1
-0.4
-2.0
complex community
Community=arabino-guar; Passage=4
-1.0
-0.0
-1.8
+0.0
-2.2
complex community
Community=Locust bean gum; Passage=4
-0.7
-0.3
-1.1
-0.1
-1.4
complex community
Community=arabino-guar; Passage=4
-0.3
-1.1
-0.3
+0.2
-1.4
complex community
Community=Kojac gum; Passage=4
-0.5
-0.7
-0.1
+0.2
-1.7
complex community
Community=guar; Passage=4
-0.1
-0.5
+0.4
-0.5
-1.7
complex community
Community=guar; Passage=4
-0.6
-0.4
-0.6
+0.3
-0.8
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
-0.3
-0.5
-0.2
-1.0
complex community
Community=arabino-guar; Passage=4
+0.3
-0.3
-1.8
-0.1
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.9
-0.0
-0.7
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
-0.1
-0.6
-0.0
-0.6
complex community
Community=Kojac gum; Passage=1
+0.1
-0.3
-0.7
+0.0
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
-0.5
-0.6
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.4
+0.2
+0.1
-0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
+0.1
-0.2
+0.2
-0.5
no phage control
no phage control
+0.1
-0.2
-1.1
+0.1
+0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.5
-0.1
-0.3
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
+0.3
+0.2
-0.2
-0.4
complex community
Community=Locust bean gum; Passage=1
+0.5
+0.0
-0.7
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
+0.3
+0.1
-0.0
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.4
+0.5
+0.5
-0.2
-0.6
complex community
Community=Locust bean gum; Passage=4
-0.7
-0.7
+0.6
+0.2
+0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.2
+0.7
+0.1
-0.8
phage
phage_bap4
+0.3
+0.5
-0.8
-0.2
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.3
+0.7
+0.2
-0.3
-0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.0
+0.4
+0.6
+0.2
-0.5
phage
phage_bap4
+0.3
+0.2
-0.4
+0.3
+0.7
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.2
+1.0
-0.2
+0.2
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