Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10715	PS417_10720	PS417_10725	PS417_10730	PS417_10735
stress	Cisplatin 0.01 mg/ml	-0.8	-0.4	-5.2	+0.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-5.0	-0.5	+0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-5.5	-0.3	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-5.0	-0.1	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	+3.6	+0.2	-0.1	+0.3
soil	soil sample 2; outgrowth in LB	-0.7	+4.9	-0.4	+0.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+3.6	-0.2	+0.1	-0.2
soil	soil sample 5; outgrowth in LB	-1.3	+6.5	-0.5	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+5.0	+0.2	+0.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+4.4	+0.1	-0.2	-0.1
stress	Gentamicin 0.008 mg/ml	+0.1	+4.4	+0.5	-0.3	-0.2
soil	soil sample 7; outgrowth in LB	-0.7	+5.8	-0.4	-0.2	-0.0
seeds	Growth on radish seeds for 72 hours	+1.4	+3.4	-0.3	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+4.3	+0.5	+0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.7	+3.2	+0.1	+0.4	+0.6
soil	soil sample 6; outgrowth in LB	-0.7	+7.4	-1.1	-0.0	-0.4
soil	soil sample 8; outgrowth in LB	-0.6	+6.1	+0.2	+0.0	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+5.0	+0.0	+0.3	+0.8
soil	soil sample 4; outgrowth in LB	-1.2	+7.6	-0.2	-0.3	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.9	+8.3	-1.1	-0.2	-0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.8	+7.4	-0.1	-0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+6.2	+0.4	-0.1	-0.1
soil	soil sample 3; outgrowth in LB	-0.7	+7.9	-0.8	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+6.8	+0.4	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+6.3	+0.4	-0.1	-0.1
root	root sample 6; outgrowth in LB	-0.3	+8.3	-0.4	+0.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	+8.4	-0.0	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+6.9	+0.1	-0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+7.3	+0.5	-0.0	-0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.9	+8.4	-0.6	-0.1	+0.1